Protein

View in Explore
Genbank accession
YP_009910762.1 [GenBank]
Protein name
polygalacturonase/tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
TF
Evidence Phold
Probability 1,00
Protein sequence
MFFTQEDYRKIEKWLLANSRKDTDFAGAATPLKGNETVVLVQNGKNVKASVKDVVEQLFLLGVSDFVNITDKYGESYISLSQAIELIPYRSRKIGQVVTFLDDTGKWAMFQFQGTRKNQWGTLSLWVDLIDLMTGLTITDSEDIVTETNSANQVALKFADKTYNEADYSGLGRVYLRKNIVNVEDPVTGNIVKMNYLTQSMISKENTIYIVQYSYNLNGQTITIPSGCVLKFEGGSISNGSIKGTDTNIIAPQIRIFNTILLSGTWKVRDIFDDWFDFNATTNFDNINNFYNISILQSDDLENNVILKGNYYSSLKDGIVLSLSSNTNLVLNGSISLLPNNLSSYSIIKGVDKENIKISGGGRLIGDLQNHLGDTGEWGFGISFTGCKTVSITNIDSSYMWGDGLYIGASDDTKEETLSQNIQVNNCKFEYNRRQGISITGAVDVFVNNCYFFNTGKINGTSPKAGLDIEPSGLYNSNVTISNCIADSNVSTGFLVYGDNRNIVIDNCASKNQLISITIAQRSATTDNDDVFIRHGNIGGSLQITRGNIRVEDCEVDSVYFTADTSGIGANVTISNSVIGAKRWEGSTYFNSVFLIDSNSQINNLYIFDSKIDYDPSILTQGLFNIGGNSIRDNILFENCDISQKNTVNSLNTKVGSYRNCRFYNMTRIYLANEPNKTVEFTDNYCAMTRESSSTNIFSFLNSSSTQDVILFVVRNNTFSTKGSINVGSIGLIDVTGVNLGNKMIFENNHFLTQYPLTQEQIIKALSNRITVDTNYNFTSRFPYRATLESLPAYNTFDAGALIYGDDNLLYFWNGTNLTNSEGTDARKVVIV
Physico‐chemical
properties
protein length:832 AA
molecular weight: 92331,17820 Da
isoelectric point:4,85123
aromaticity:0,10457
hydropathy:-0,20072

Domains

Domains [InterPro]
IPR006626
302–323
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR012334
305–538
IPR012334
IPR011050
306–519
IPR011050
IPR039448
424–578
IPR039448
YP_009910762.1
1 832
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacteroides phage crAss001
[NCBI] 		2301731 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009910762.1 [NCBI]
Genbank nucleotide accession
NC_049977 [NCBI]
CDS location
range 14369 -> 16867
strand +
CDS
ATGTTTTTTACACAAGAAGATTATAGAAAAATAGAGAAGTGGCTCCTTGCAAACAGTAGAAAGGATACTGATTTTGCTGGAGCTGCAACTCCTCTTAAAGGAAATGAAACTGTAGTTCTTGTACAGAATGGTAAGAATGTAAAGGCATCAGTGAAAGATGTAGTTGAGCAACTATTTCTTCTTGGTGTATCTGACTTTGTGAACATTACTGATAAGTATGGTGAGAGTTATATTTCACTATCTCAAGCTATAGAATTAATTCCTTATAGGAGTAGAAAGATTGGTCAGGTAGTTACTTTCTTGGATGATACTGGAAAATGGGCTATGTTCCAATTCCAAGGTACAAGGAAGAATCAGTGGGGTACTTTATCTCTTTGGGTTGATTTGATAGACCTTATGACAGGTCTTACTATCACAGATAGTGAAGATATTGTTACTGAGACTAATAGTGCAAATCAAGTAGCTCTTAAGTTTGCAGATAAAACTTATAATGAAGCTGACTACTCAGGTTTAGGCAGAGTATATCTTAGAAAGAATATTGTAAATGTTGAAGACCCTGTAACAGGTAATATAGTTAAGATGAATTACCTTACACAGTCAATGATTTCTAAAGAGAATACTATCTATATAGTGCAATATAGCTATAACTTGAATGGTCAAACTATCACTATCCCAAGTGGGTGTGTACTCAAGTTTGAAGGAGGGAGTATAAGTAATGGTTCTATAAAGGGCACAGATACTAATATAATAGCTCCTCAAATTAGAATATTTAATACTATCTTATTATCTGGTACTTGGAAAGTTAGAGATATATTTGATGATTGGTTTGACTTTAATGCTACTACCAATTTTGATAATATCAATAATTTCTATAATATATCCATATTACAATCAGATGATTTGGAGAATAATGTAATTCTTAAAGGGAACTATTATAGTTCTCTTAAAGATGGAATAGTTTTGTCCTTATCTTCTAATACCAATTTAGTACTTAATGGTAGTATTAGCTTGCTTCCTAATAACCTATCTTCATATTCTATAATAAAAGGAGTTGATAAGGAAAATATTAAAATAAGTGGAGGGGGAAGATTAATTGGAGATTTGCAAAATCACTTAGGTGATACTGGAGAATGGGGATTTGGTATTAGTTTCACAGGTTGTAAAACTGTATCAATAACTAATATTGATAGTTCTTATATGTGGGGAGATGGCTTATATATTGGGGCATCAGATGATACAAAAGAGGAGACACTATCTCAAAACATACAAGTAAATAATTGTAAATTTGAATATAATAGAAGACAAGGTATATCTATTACAGGAGCTGTTGATGTATTTGTTAACAATTGTTATTTCTTTAATACTGGTAAAATAAATGGAACAAGTCCAAAAGCTGGATTAGATATAGAACCAAGTGGATTATATAATAGTAATGTTACAATAAGTAATTGTATAGCAGATTCAAATGTATCTACTGGATTTTTGGTTTATGGGGATAATAGAAATATTGTAATTGATAATTGTGCATCTAAAAACCAATTAATATCTATAACTATAGCCCAAAGAAGTGCAACAACTGACAATGATGATGTATTTATAAGGCATGGAAATATAGGAGGTTCTCTACAAATCACAAGAGGTAATATAAGGGTAGAGGACTGTGAAGTAGATTCAGTTTATTTTACTGCTGATACATCAGGGATAGGAGCAAATGTAACTATTAGTAATTCAGTGATAGGAGCAAAAAGATGGGAAGGAAGTACATATTTCAATTCAGTTTTTTTAATTGATTCTAATAGCCAAATTAACAACTTATATATATTTGATTCCAAAATAGATTACGACCCATCAATTCTTACTCAAGGATTGTTCAATATAGGTGGGAATTCTATAAGAGATAATATCCTATTTGAAAATTGTGATATTTCACAGAAAAATACAGTAAATTCTCTAAATACAAAAGTAGGCTCTTATAGAAATTGTAGATTCTATAATATGACAAGAATATATTTGGCTAATGAACCAAATAAAACAGTTGAGTTTACAGATAATTACTGTGCCATGACAAGAGAAAGTTCAAGTACCAACATATTTAGTTTTCTAAATTCAAGTAGTACTCAAGATGTTATACTCTTTGTTGTAAGAAATAACACCTTTAGTACTAAGGGGTCTATAAATGTTGGAAGTATAGGACTTATAGATGTTACTGGAGTTAATCTTGGTAATAAAATGATATTTGAGAATAATCATTTCTTAACTCAATATCCTCTTACACAAGAGCAGATAATAAAAGCCCTAAGCAATAGGATAACAGTTGATACCAATTATAATTTTACCTCCAGATTTCCTTATAGAGCTACTTTAGAATCTTTACCTGCTTATAATACTTTTGATGCAGGGGCTTTAATATATGGGGATGATAATTTGTTATACTTTTGGAATGGTACAAATTTAACTAATTCAGAAGGTACAGATGCCAGAAAGGTAGTAATAGTCTAA

Tertiary structure

1 / 4
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
PhiCrAss001, a member of the most abundant bacteriophage family in the human gut, infects Bacteroides Shkoporov,A.N., Khokhlova,E.V., Fitzgerald,C.B., Stockdale,S.R., Draper,L.A., Ross,R.P. and Hill,C. 2018-06-26 — GenBank