Protein

View in Explore
Genbank accession
QDH85876.1 [GenBank]
Protein name
tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MNMALRTFGGGPADVTSDATGQVVAGISLQVFTAAVGGQRVTELYDINGTPLPGVVTSSTEAGKLGRIEFSAAEDYSVLFLDPGYGMRWVVPAREAFNLTTQAVAKAEQAIALAENAVTHPQLDAVFLNPSTFPTVYPHQFGAKGDGATDDTIAVQAAVDYLNARGGGVLSYDPSVGSGFYQQHDIQLGPNITVEGNGCRIRARGYACFHAGSGTKKGYGAYTKNLVFRNLVFQGDFDTLRDCALTFHHTENVLFENCTWIEAMGSGHCLDLCGVKNVTFRSCKFLGYRYAGRDHAEAIQIDHSTANGLDNKDPAGTYDGLPCVNITVQDCVFDQLVKGSTTYEAPTPFGNHVHMLQLHQNLRFIGNYVRGAHYVSAQANANGWLHTYGVDGFEVSGNTFESTGASMIVIRVRTQTTGILPINYESQTGPTSSEIGAVPSRRIRISGNAFKGFASDANTLPLIKIDGLSGAPVTDVAVEGNTFTDCYPEARKATGGDYGPDTIALSYVSGVIVRGNSFRHVRRLVFLSVCDNVTVEANTAADVYWSAIILDTSGRNHVLRGNTLERYVVGISVVGVVNCVVQGNTLKDSRNATGLWTGYDAPIRFSAGARGSVIGNIVESTTPPAFQAAQAIKFTGTHTGGLYGSNLQSGHTKEATVDTGSTVTAK
Physico‐chemical
properties
protein length:666 AA
molecular weight: 70862,39400 Da
isoelectric point:5,97835
aromaticity:0,09009
hydropathy:-0,09024

Domains

Domains [InterPro]
IPR011050
134–482
IPR011050 IPR006626 IPR006626 IPR006626
IPR012334
139–522
IPR012334
IPR006626
275–303
IPR006626 IPR006626 IPR011050
IPR039448
388–586
IPR039448
IPR006626
473–515
IPR006626
QDH85876.1
1 666
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Brevibacterium phage AGM6
[NCBI] 		2591423 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH85876.1 [NCBI]
Genbank nucleotide accession
MN023181 [NCBI]
CDS location
range 20082 -> 22082
strand +
CDS
ATGAACATGGCACTGCGAACCTTTGGCGGAGGCCCCGCCGACGTCACCTCAGACGCAACCGGGCAGGTTGTGGCTGGGATCAGTCTGCAAGTCTTCACTGCAGCAGTTGGCGGGCAGAGAGTCACGGAACTCTACGACATCAACGGAACCCCTCTGCCGGGTGTGGTCACGTCGAGTACTGAGGCCGGGAAGTTGGGTCGCATCGAGTTCTCTGCCGCAGAAGACTACTCGGTGCTGTTCCTCGACCCCGGCTACGGGATGCGGTGGGTTGTCCCCGCCAGGGAAGCGTTCAACCTCACCACTCAGGCGGTAGCGAAGGCCGAGCAGGCTATTGCTCTCGCCGAGAACGCAGTCACTCACCCCCAGTTGGATGCAGTGTTCCTCAACCCGTCGACGTTCCCGACCGTGTACCCGCACCAGTTCGGCGCGAAGGGTGACGGTGCGACTGATGACACGATCGCTGTGCAGGCCGCTGTCGATTATTTGAACGCACGTGGTGGCGGAGTTCTGTCCTATGACCCGTCTGTCGGGTCAGGGTTTTACCAGCAGCATGACATCCAGCTTGGCCCCAACATCACCGTCGAAGGCAACGGATGCCGTATTCGTGCCCGCGGATATGCGTGCTTCCATGCAGGGTCGGGAACGAAAAAGGGCTACGGAGCATACACGAAGAACCTCGTGTTCCGGAACCTCGTGTTCCAGGGAGACTTCGACACACTCCGTGACTGCGCGTTGACGTTCCACCACACGGAGAATGTGCTGTTTGAGAACTGCACGTGGATCGAAGCGATGGGGTCAGGGCATTGCCTGGACTTGTGCGGGGTGAAGAACGTCACGTTCCGGTCCTGCAAATTCTTGGGCTACAGGTATGCCGGACGTGATCATGCTGAGGCAATCCAGATCGACCACTCCACCGCGAACGGTCTCGACAACAAAGACCCCGCCGGCACCTATGACGGTCTGCCCTGCGTCAACATCACCGTCCAGGATTGTGTGTTCGACCAACTGGTGAAAGGGTCCACCACCTATGAGGCTCCGACACCATTCGGCAACCACGTGCACATGCTGCAGCTCCACCAGAACCTCAGGTTCATCGGCAACTATGTGCGCGGAGCCCACTATGTGAGTGCCCAGGCCAACGCGAACGGGTGGCTCCACACCTACGGTGTTGACGGGTTCGAGGTCTCGGGCAACACGTTCGAGTCAACGGGGGCGTCGATGATCGTCATCCGGGTGCGCACACAGACCACCGGCATTCTCCCAATCAACTACGAGTCACAAACAGGCCCTACGTCCTCGGAGATCGGGGCGGTGCCGTCGAGGCGGATCCGCATCAGCGGAAACGCGTTCAAGGGGTTCGCCTCGGATGCGAACACACTCCCACTGATCAAGATCGACGGGCTCTCAGGTGCACCGGTCACTGATGTGGCTGTCGAGGGCAACACGTTCACAGACTGCTACCCGGAAGCGCGGAAAGCCACGGGTGGAGACTACGGGCCTGACACGATCGCATTGTCCTACGTGTCCGGGGTGATTGTGCGCGGCAACTCGTTCCGGCACGTGCGCCGACTCGTGTTCCTCTCCGTCTGCGACAACGTGACTGTCGAAGCGAACACTGCTGCCGACGTGTATTGGTCCGCGATCATCCTCGACACGTCCGGTCGGAACCATGTCTTGCGCGGCAACACCCTCGAACGGTATGTCGTTGGTATTTCCGTTGTCGGAGTGGTCAACTGTGTCGTCCAAGGGAACACACTCAAAGATTCCCGCAACGCGACCGGCCTCTGGACAGGCTACGACGCACCGATCAGGTTCTCTGCTGGTGCCCGTGGTTCTGTGATCGGCAATATCGTCGAGTCCACAACCCCACCAGCGTTCCAAGCAGCACAGGCGATCAAGTTCACCGGCACACACACTGGCGGCCTGTACGGGTCGAACCTGCAATCGGGGCACACCAAAGAAGCCACTGTTGACACCGGCTCAACCGTGACAGCGAAGTGA

Tertiary structure

PDB ID
2dad7d92ee3db3575ddd6ec0d7f022b1a44f91e20e9caeaa0fbf282bd00d83e5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7999
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
DNA tandem repeats contribute to Brevibacterium aurantiacum phages genetic diversity de Melo,A.G., Rousseau,G.M., Tremblay,D.M., Labrie,S.J. and Moineau,S. 2020-07-07 — GenBank