Protein

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Genbank accession
AIX20445.1 [GenBank]
Protein name
tail collar domain protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MSQINFPNIPSDGDEFLAPNGTTYQYDSDTGQWKILLGPGADGPKGPIGPEGATGSTGPDGPTGATGTDATRITGEIIAFGGTTVPSGWLECNGQSAPSALAAVLGISNVPDLRGEFIRGFDNGRGVDSGRAILTAQGDEFESHTHIQNSHNHTQNPHTHQANYTPLTYVAGQPQANGLVTAVTALTNISTNTATNIANTATNQSTGGTETRPRNISLMYIIKT
Physico‐chemical
properties
protein length:224 AA
molecular weight: 23205,03940 Da
isoelectric point:4,90415
aromaticity:0,05804
hydropathy:-0,44152

Domains

Domains [InterPro]
SSF88874
71–223
SSF88874
IPR037053
74–119
IPR037053
IPR011083
75–118
IPR011083
AIX20445.1
1 224
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage ACG-2014f
[NCBI] 		1493511 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIX20445.1 [NCBI]
Genbank nucleotide accession
KJ019053 [NCBI]
CDS location
range 214659 -> 215333
strand +
CDS
ATGTCTCAAATCAATTTCCCAAATATCCCATCAGATGGTGATGAGTTTTTGGCACCCAATGGTACAACTTACCAATATGATTCCGACACAGGTCAGTGGAAGATTCTATTAGGTCCTGGTGCCGATGGTCCCAAGGGTCCTATAGGTCCTGAAGGTGCTACTGGATCCACAGGTCCCGATGGTCCTACTGGTGCTACTGGAACGGATGCTACAAGAATAACTGGTGAGATTATTGCATTTGGTGGAACTACTGTTCCATCTGGCTGGCTTGAATGTAATGGTCAATCTGCTCCTAGTGCTCTTGCTGCTGTATTAGGTATATCTAATGTACCAGACTTACGTGGTGAGTTTATAAGAGGATTTGATAACGGTAGAGGTGTTGATAGTGGCCGTGCCATTCTCACCGCTCAGGGTGATGAATTTGAGAGTCACACACACATTCAAAATTCCCATAACCATACACAAAATCCACACACTCACCAAGCAAATTACACACCCTTAACCTATGTGGCGGGGCAACCACAAGCAAATGGATTGGTTACCGCGGTAACAGCTCTAACAAACATTTCCACAAACACAGCAACTAATATTGCAAACACAGCAACCAACCAAAGCACAGGTGGTACTGAAACCCGTCCACGCAACATATCTCTGATGTACATCATTAAAACCTAA

Tertiary structure

PDB ID
905dad02b39c4dd142427542d2a731bf036c82d0b82d637f732bb400d13379a3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8025
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecological redundancy of diverse viral populations within a natural community Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B. 2015-03-20 — GenBank