Protein

View in Explore
Genbank accession
QDB70928.1 [GenBank]
Protein name
portal protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTLLVQPSFSAGEMAPATYGRVDLARYYTGLRTCRNFQVLPEGGVQNRSGTKFIAEVKASANFTRLIPFQYSTEQTYILEFGNLYIRFVSNGGQVVSGSVPYEIASPYTTADLRDLKFTQSADVLTIVHPNYAPRELKRLAPTNWTLTTIDFQPGIAAPTGLSGSPRTGGSGDTTNYRYRVTAVSSKDTGSIESWASNTVTVASFDDKPGATLSWTAVTGADHYNIYKDKSSGVFGYIGQADTTSFSDINIAPDNDKTVPIGYNPFTGGNNPSVVGYFQQRLVFAASKDQPQTIWMSRVGDFHNFGYSDPYKDDDGIEFTIASREVNQIRHLVSLRDLLVLTSGAEWSVSSSKETGITPESISVSAQSYFGSSGVIPAVYANTALYIQARGGKLSTLAYNDIDAGFRPSDVSVLSSHLLRGYTIEDQAFTLTPNGVLWMVRNDGVLLGFTFMPEQQVFAWHRHDTDGEVESVATVPEGDEDILYMIVKRTINGSTKRYIERMQSRQLTKFESGDYVYDRSFFVDCGLTYDGRGTMSATLTGGTDWKYPNALTLEALSAPFNPGHVGRYLILYGGGDENNIGDVLTVKILAYDSPGVVSVEPQTIVPESLRGIPATRWGFAATTISGLGHLEGKTVSILADGNVAPQAVVSGGSITLDGPSLVVHVGLPITAEIETLDITMQNQQAFLGNKKRINQLVVLLEQSRGFWAGARSDRLRAASGWEYKQRATENYGEPIELKTGKAEISISTDWTDDGRIFIRQSDPLPITILGVLPNVQAGG
Physico‐chemical
properties
protein length:779 AA
molecular weight: 84783,85320 Da
isoelectric point:5,19101
aromaticity:0,10013
hydropathy:-0,20385

Domains

Domains [InterPro]
IPR013783
196–261
IPR013783
QDB70928.1
1 779
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP_YA3
[NCBI] 		2588095 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDB70928.1 [NCBI]
Genbank nucleotide accession
MK819239 [NCBI]
CDS location
range 7318 -> 9657
strand +
CDS
ATGACCCTGCTCGTTCAGCCGTCTTTCAGCGCGGGCGAGATGGCGCCTGCGACCTATGGCCGTGTTGACCTGGCGCGCTACTACACTGGTCTGCGCACCTGTCGAAACTTCCAGGTGCTACCAGAGGGTGGCGTACAGAACCGCTCTGGCACGAAGTTCATCGCCGAGGTGAAAGCCAGCGCGAATTTCACTCGCCTTATCCCCTTCCAGTACTCGACCGAACAGACCTACATCTTGGAGTTCGGCAACCTGTATATCCGCTTCGTGAGCAATGGCGGGCAGGTTGTCAGTGGATCGGTGCCCTACGAGATCGCTAGTCCGTACACAACTGCCGATCTGCGCGATCTGAAGTTCACTCAGTCTGCCGACGTTCTGACCATCGTTCACCCGAACTACGCGCCACGCGAGTTGAAGCGCCTTGCCCCGACCAACTGGACGCTGACCACTATCGACTTCCAGCCGGGCATCGCTGCTCCAACTGGACTCTCTGGCTCGCCGCGCACTGGTGGGTCTGGCGACACAACGAACTACCGGTACCGGGTTACGGCAGTCAGTTCGAAGGACACAGGTTCCATCGAGTCCTGGGCGAGCAATACCGTCACTGTGGCGAGCTTTGACGATAAGCCAGGCGCCACCCTGTCCTGGACAGCCGTAACAGGTGCGGACCACTACAACATCTACAAGGACAAGTCATCGGGGGTTTTCGGCTACATCGGCCAGGCTGACACCACTTCGTTCAGCGACATCAACATCGCGCCTGACAACGACAAGACTGTGCCGATTGGATACAACCCATTCACTGGTGGCAACAACCCATCGGTCGTAGGCTACTTCCAGCAGCGGCTAGTCTTCGCAGCCAGCAAGGACCAGCCTCAAACCATCTGGATGAGCAGGGTCGGGGACTTCCATAACTTCGGATACTCGGACCCCTACAAGGACGATGACGGCATCGAGTTCACGATTGCCAGCCGCGAGGTAAACCAGATTCGTCACCTCGTATCGCTGCGTGATCTTCTGGTGCTGACCTCTGGCGCAGAGTGGTCGGTTAGTTCCTCGAAAGAAACCGGTATCACCCCTGAGTCGATCTCTGTCAGCGCGCAAAGCTATTTCGGTTCTAGCGGCGTGATTCCAGCCGTCTACGCCAATACTGCGCTGTACATCCAGGCCAGGGGCGGCAAGCTTTCGACGCTCGCCTATAACGATATTGATGCCGGCTTCAGGCCAAGCGACGTGAGCGTTCTTTCATCGCACCTACTGCGCGGGTACACCATCGAGGACCAAGCATTCACGCTGACGCCCAATGGCGTTCTGTGGATGGTCCGTAACGATGGTGTATTGCTCGGATTCACGTTCATGCCAGAGCAGCAGGTTTTCGCCTGGCATCGTCACGACACCGATGGCGAGGTCGAATCCGTAGCGACTGTTCCAGAGGGCGACGAAGATATCCTCTACATGATCGTCAAGCGCACGATCAACGGGTCTACCAAGCGTTACATCGAGCGCATGCAGTCACGCCAGTTGACCAAGTTCGAAAGCGGCGATTACGTCTATGACCGCTCGTTCTTCGTCGACTGCGGCCTGACTTACGACGGGCGCGGCACCATGAGCGCTACGCTGACCGGTGGGACTGACTGGAAATACCCGAACGCGCTGACTCTTGAAGCGCTATCGGCTCCTTTCAATCCCGGGCATGTCGGTCGCTATCTGATCCTCTACGGCGGTGGAGACGAGAACAACATTGGCGATGTGCTGACCGTCAAGATTCTCGCCTATGACTCTCCCGGCGTCGTTTCCGTTGAACCGCAGACTATCGTCCCGGAGTCGCTACGAGGAATCCCGGCAACACGCTGGGGCTTCGCCGCAACCACCATCAGCGGCCTTGGCCATCTTGAGGGGAAGACGGTTTCGATTCTCGCGGACGGAAACGTCGCGCCTCAGGCGGTTGTCTCTGGGGGTTCCATCACGCTGGATGGTCCTTCACTTGTTGTGCATGTCGGCCTCCCGATCACTGCGGAGATAGAGACGCTAGATATCACCATGCAGAACCAGCAGGCGTTTCTCGGCAACAAGAAGCGCATCAACCAGCTTGTCGTTCTGCTCGAGCAGAGCCGTGGCTTCTGGGCGGGCGCTCGGAGTGATCGTTTGAGGGCCGCAAGTGGCTGGGAATACAAGCAGCGTGCAACAGAGAACTACGGCGAGCCTATCGAACTGAAGACAGGCAAGGCGGAAATCAGTATCAGCACAGACTGGACGGACGATGGCCGCATCTTCATCCGCCAAAGCGACCCGCTGCCCATTACGATCTTGGGAGTTCTTCCGAATGTCCAGGCCGGGGGCTGA

Tertiary structure

PDB ID
57c6ca43be89c78180f25bd740202345a6c7f88f65baf79da05476c58cbd3b65
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2284
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization, Genome Sequence,and Analysis of Pseudomonas phage vB_PaeP_YA3 Yu,X., Gu,Y., Xu,J., Zhang,R. and Liu,X. 2019-06-18 — GenBank