Protein

View in Explore
Genbank accession
QDH45047.1 [GenBank]
Protein name
tail fibers protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,78
TF
Evidence GenBank
Probability 1,00
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPINFAVTRIPDGVPFRVFIDEIGEDNDVTEDFEALKEDATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGATSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMTTYKVFNAAGKIVEYGYYDAGHGYLDIHPDGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTAGSDFSGVLVPNDTFSLVAAWTNTDVDLSGGGYQVVSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSVPYGPIYTAQGTVSGRTPDYNGVTIYADLPVASRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGVKTETYDSKGIRNYKQAFWAAHRRHQKNILKKISVSFTATEEGIFALPNRAISVVKGSRMATYDGYITAVNGLTVELSQPVKFASGDDHSLVLKRRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFNNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93845,80530 Da
isoelectric point:5,30822
aromaticity:0,09859
hydropathy:-0,36068

Domains

Domains [InterPro]
NF040662
352–832
NF040662
QDH45047.1
1 852
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SF1
[NCBI] 		2575330 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH45047.1 [NCBI]
Genbank nucleotide accession
MK770409.1 [NCBI]
CDS location
range 5315 -> 7873
strand +
CDS
TTGGCGCTAGTAATCCACTATACCCGTAACGAAGACGGCACATTTGACGTTAAACGTTATCGCGATAACCCAATTAACTTCGCCGTTACCCGCATTCCGGATGGGGTTCCGTTTCGCGTTTTTATCGACGAAATTGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAGACGCGACTTTCCACATTGTGGAATCCGCTGGTGGTGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATTCTTAAACCGTTGGCGAAGCTCTTGTCGCCGTCCGTGAAAGGTGCGACCTCGAACCTTGCGAACTCGCAGGCAGATTCCCCAAACAACAGTCTTACTGACCGCAACAACAAGGCGCGTCCGTACGAGCGCAGCTACGATATCTGCGGGACGGTGCAAACCATCCCTAATAACCTTATGACTACTTATAAGGTGTTTAACGCCGCCGGTAAAATTGTAGAGTACGGCTACTACGACGCCGGCCACGGCTACCTCGACATCCACCCGGACGGTATAACTGACGGGGATACCCGCGTATCAGATATAACAGGTACGTCGGTTGCCGTGTACGCACCTTATACGTCACCAAATAATACATCCACGCCACAGGTAATGGTCGGAGACCCCATAGAGCAAGGCCTGTACATCACCGTAGAATCTAACGAAGTAGACGGCGTGGTTCTGAAAGCCCCCAACGGTCTCGGCATTTCTTTCTCTTACATGTCAGGGTATCCGTCTTTGTCAGGAAACATTGGCACTATATACGACCCAACAGCCGGCTCGGATTTTTCTGGAGTACTGGTGCCTAATGACACGTTTTCGCTGGTGGCCGCGTGGACAAATACAGACGTTGACCTGTCCGGCGGCGGGTATCAGGTAGTAAGCGTGTCCGAAGGGACTGTTACCTTTATAGTACCTGGTGGTCTAATTGGTAGGTGGCAAGAAATAAGACCTGGTTCGTTTTTCCGCGGTGATGGAGAGGCCTCGCTGCAACCAGACAACACGTATGAGAAAACCTTAACCGATTGGGTTTCAATAAACCGTACCGAGGTAGAACGCATTGTAGCCAATATCGCCGCCGCTAATGGTATGTATAAAGACAACGGAAAATCGAAAACACTGGCGTCGGTCACCGCTGAGATACAGTACCAGTTACTTGATGAAAACAGCGTTCCTTACGGGCCAATATACACGGCGCAAGGAACTGTGTCCGGGCGTACACCGGACTACAACGGCGTCACTATTTACGCTGACCTGCCGGTTGCGTCACGGGTGCGGGTGCGCGCCAGAAGGGTAACAGACCTGGACTTTAATTTCGAGGGGTCCGTAGTCGATGAGATAACGTACGTTAACTTATACGGGCAAACACGTGACAACACCCCACACTACGGCAACAGAACAACAGTACACTCGATGCGCAAGCAGACCCCCCGTGCTGCGGAAGTAAAGCAACCGCAGTTGCGTATGATTGCTACTGAAATGGTGTACAAATACCTCGGTAACGGTGTTTTCGAAGATACGATGACACCTAATACACAGGCTGTACAATCCCTCATCCGCCTGGCGCGTGACCCAGATGTGGGCGGTTTAAACCTGACAGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTCGAAGCGTATTTTGGCGACAAACAGGCTGGAGAATTTTGTTACACGTTTGATGACTATAAAACCACTATGCAGGATATAGTTAGTACTATAGCCGACGCTATCTTCTGTACCCCATACAGGCGTGGGGCGGACATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCTGAGATGGTGTTCACCCACCGAAGCAAGGCTGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCTCAGGTGTTCGATAGCCTTAAATTCTCGTACATAGACCCAAAAACAAACGTTAAAGAAACAATAACAATACCGGAAACTGGTGGGGTTAAAACGGAGACCTACGATTCAAAAGGTATTCGCAACTATAAGCAGGCTTTCTGGGCAGCGCACCGCCGCCACCAGAAGAACATTTTAAAGAAAATTTCAGTGTCGTTTACCGCCACGGAAGAGGGTATCTTTGCGCTACCAAACAGGGCCATTAGTGTAGTGAAAGGCTCCCGGATGGCTACCTATGACGGCTATATAACAGCAGTAAACGGCCTAACTGTTGAGCTGTCACAGCCTGTTAAATTTGCGTCAGGAGACGACCACTCTCTTGTTCTCAAGCGGCGAGACGGTGGCGTTCAAAGCGTTAATGTAGTCCCTGGAGCGCACGACAGGCAGGTGATTATGACTTCTGTACCGCAGGAAGCCATTTACACGGGTAATAGCGCCCTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACCGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCTAACGGATTCAATAACGGTTTTAACTAA

Tertiary structure

PDB ID
ce925f53f674315a927ef7fd5741f07eb5a46bfed46a7707dd62ca3be631001d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8258
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Wang,S., Delaquis,P., Tremblay,D., Moineau,S., Levesque,R. and Goodridge,L. 2019-09-14 — GenBank