Protein

View in Explore
Genbank accession
YP_009811102.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,58
Protein sequence
MALISQTVKNLKGGISQQPNILRYPEQAEAQINAFSSETEGLQKRAPSVFTKIISPRAGDFGSKPLVHIINRDTVEQYQVVFTGTGIRVFGLDGKEYSVTGDMQYVQVSDPQKMLRCVTVADYTFIVNRTWTVQANGNVTDPGFRTDGDCIINVRGGQFGRTLRIHINGGTQASLTLPDGSDAKQTPQTDAQYIVGQLAAQLRTNMGGWTINEGSGFIHIIAPGGDNIRSVATEDGYANQLINAVTHEAQSFTKLPLEAPNGYKVKISATNNGTSDKYYVQYDALNKVWRETVGWGVQVGLDARTMPWALVRQANGSFQMTQLGYANRTCGDNDTNPMPSLVGQTINDVFFFRNRLGFLSGENIVMSRTAKYFNFFPPSVANLSDDDPIDVAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSSGVLTPKSIQLDLTTEFDVDDTARPYGVGRGVYFAAPRASFTSIKRYYAVQDVSDVKDAEDISAHVPSYIPNGVFSIHGSGTENFACVLTTGAPNKLFMYKYLFLEGELKQQAWSHWEFSEGTRILAAQCIGSTMYLILENDQIFMARIHFTKNTVDFSDEPYRIYMDRKIRYVIPKGTYNDDTYQTTFNLSNVYGGLGFWKDKVSCVFLDGQVEEFTPPNGVSWEGNQPIIRLNGNREGEVVFLGANYEFYYEFSKFLIKKTAEDGSTATEDIGRLQLRRAWVNYEDSGAFLIQVENTSRLFEYMMAGGRLGSDSLRVGYLNVGTGQFRFPVVGNAQLNVVRLISDNTTPLNVIGCGWEGNYNRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 88294,15600 Da
isoelectric point:5,59122
aromaticity:0,11335
hydropathy:-0,27494

Domains

Domains [InterPro]
IPR058003
1–794
IPR058003
YP_009811102.1
1 794
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoP_JA10
[NCBI] 		2283033 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811102.1 [NCBI]
Genbank nucleotide accession
NC_048052 [NCBI]
CDS location
range 24337 -> 26721
strand +
CDS
GTGGCTCTTATTTCTCAAACAGTTAAAAACCTGAAAGGCGGTATTAGCCAACAGCCGAATATCTTACGTTACCCTGAGCAGGCCGAAGCGCAAATCAATGCGTTCTCCTCTGAGACTGAAGGTCTTCAGAAACGCGCCCCTTCAGTGTTCACTAAGATTATCTCACCTCGTGCTGGGGACTTCGGTAGTAAACCTCTGGTCCATATCATCAACCGTGACACAGTAGAGCAGTATCAGGTGGTCTTCACCGGGACAGGCATTCGTGTGTTCGGTCTGGACGGCAAAGAGTATTCTGTAACGGGTGACATGCAGTACGTTCAAGTGTCCGACCCTCAGAAGATGCTGCGCTGCGTTACCGTGGCTGATTACACTTTCATCGTCAACAGGACGTGGACCGTGCAGGCTAACGGTAATGTGACCGACCCCGGCTTCAGGACTGATGGTGACTGTATCATCAACGTCCGTGGTGGTCAGTTTGGCCGTACCTTAAGGATTCACATCAACGGAGGCACCCAAGCCTCTCTGACGTTACCTGATGGTTCTGACGCTAAGCAGACCCCGCAGACCGATGCTCAGTACATTGTGGGCCAGTTGGCTGCTCAACTCCGTACCAACATGGGCGGCTGGACTATCAACGAAGGCTCAGGGTTCATCCACATCATTGCTCCGGGTGGAGACAACATCCGCTCAGTGGCAACAGAGGATGGCTATGCGAACCAGTTGATTAACGCCGTGACCCATGAGGCTCAGAGTTTCACTAAGTTACCTCTGGAGGCTCCTAATGGTTACAAGGTGAAAATCTCAGCGACCAACAACGGGACCAGCGATAAGTATTACGTTCAGTATGACGCCTTGAATAAGGTCTGGCGTGAGACTGTAGGCTGGGGCGTTCAGGTCGGTCTGGATGCGCGGACCATGCCTTGGGCCTTAGTGCGTCAGGCAAACGGCTCCTTCCAGATGACTCAGTTGGGATACGCTAACCGCACCTGTGGTGACAACGATACCAACCCGATGCCATCCCTCGTGGGCCAGACGATTAACGATGTGTTCTTCTTCAGGAACCGCTTAGGCTTCCTCAGTGGAGAGAACATTGTGATGAGTCGTACCGCTAAATACTTCAACTTCTTCCCGCCTTCAGTAGCCAACCTGAGCGACGATGACCCGATTGATGTTGCTGTGTCCCACAACCGCATCTCAATCCTGAAGTATGCCGTACCGTTCTCTGAGCAGTTACTCCTGTGGTCTGACCAAGCGCAGTTCGTCCTGTCATCTTCAGGTGTCCTGACTCCGAAGTCTATCCAGTTGGACCTGACCACTGAGTTTGATGTGGATGACACAGCGAGACCTTACGGTGTTGGTCGTGGTGTTTACTTCGCGGCTCCTCGTGCCTCCTTCACTTCCATCAAGCGTTACTATGCGGTACAGGATGTGAGTGACGTTAAGGACGCTGAGGATATCTCCGCTCACGTTCCAAGCTACATCCCGAACGGTGTGTTTAGTATCCACGGGTCAGGCACAGAGAACTTCGCGTGTGTGCTCACCACTGGTGCGCCTAACAAGCTGTTCATGTACAAATACCTGTTCCTTGAGGGTGAACTGAAGCAGCAGGCGTGGTCTCATTGGGAGTTCTCAGAGGGAACAAGGATTCTCGCGGCTCAGTGTATCGGCTCGACGATGTATCTGATTCTTGAGAACGACCAGATTTTCATGGCCCGCATCCACTTCACGAAGAACACTGTGGACTTCTCAGATGAGCCTTACCGTATCTACATGGACCGTAAGATTCGCTACGTGATTCCTAAAGGGACCTACAACGATGACACCTATCAGACGACCTTCAACCTCTCCAACGTGTACGGCGGGTTGGGCTTCTGGAAGGATAAAGTCTCCTGTGTGTTCCTTGACGGTCAGGTAGAGGAGTTCACTCCACCGAACGGTGTATCGTGGGAAGGTAACCAACCGATTATCCGACTCAACGGTAACCGTGAGGGCGAGGTGGTGTTCCTCGGTGCGAACTATGAGTTCTACTACGAGTTCTCCAAGTTCCTCATCAAGAAGACTGCGGAGGATGGCTCAACGGCTACTGAGGATATCGGTCGGTTGCAGCTTCGTCGTGCGTGGGTCAACTATGAGGACTCTGGTGCGTTCCTTATCCAAGTGGAGAATACCTCTCGACTCTTTGAGTACATGATGGCTGGTGGTCGCTTAGGCTCCGACAGTCTCCGTGTGGGTTACCTCAACGTGGGTACAGGACAGTTCCGATTCCCGGTAGTGGGCAACGCTCAGTTGAACGTAGTGCGCCTCATCTCAGACAACACGACTCCACTCAACGTGATTGGTTGTGGCTGGGAGGGTAACTACAACCGCCGCTCAAGCGGTATCTAA

Tertiary structure

PDB ID
8dafe85d3d7a68cec7343df59ac85786e3d32e1d34af4cbf35ccf9f4b66bef36
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9021
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank