Protein

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Genbank accession
YP_001700694.1 [GenBank]
Protein name
pseudogene; bacteriophage tail fiber C-terminus (Host specificity); Lambda gpJ homolog
RBP type
TF
Evidence RBPdetect
Probability 0,72
TF
Evidence Phold
Probability 1,00
Protein sequence
MDFFKGLITETYLGTELLKKIDLTENNASKLQQFSKEWQDANDKWSATWGVKIEQTKDGKYYVAGLGLSMEDTPDGKISQFLVAADRIAYINPANGNETPGFVMQGDQIIMNEAFLKYLSAPTITSGGNPPAFSLTPDGKLTAKNADISGHINAVSGSFTGEINATSGKFSGVIEAREFVGDICGSKVMQGVSIRATNDERSTSTRYTDSATYQIGKTITVMANCERNGGSGAITVTININGQVKTAEVMPYTAGIPAMYQTVVFSVYTTSPVVDISVSLRVRGQYTTSASVWPLVMVSRSGSNFTN
Physico‐chemical
properties
protein length:307 AA
molecular weight: 33025,79340 Da
isoelectric point:5,36636
aromaticity:0,08795
hydropathy:-0,18306

Domains

Domains [InterPro]
IPR053171
25–208
IPR053171
IPR015406
31–158
IPR015406
YP_001700694.1
1 307
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Phage Gifsy-2
[NCBI] 		129862 Viruses >
Host Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
[NCBI] 		99287 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001700694.1 [NCBI]
Genbank nucleotide accession
NC_010393.1 [NCBI]
CDS location
range 37032 -> 37955
strand +
CDS
CTGGATTTTTTTAAGGGACTGATTACGGAGACGTATCTTGGTACGGAGTTGCTGAAAAAAATTGACCTGACGGAGAATAACGCCAGCAAACTGCAACAATTTTCGAAGGAGTGGCAGGACGCTAACGATAAATGGAGCGCCACGTGGGGCGTCAAAATAGAGCAGACCAAAGACGGCAAATATTATGTGGCCGGACTTGGACTGAGCATGGAAGACACGCCTGACGGGAAGATAAGCCAGTTCCTGGTGGCGGCGGATCGCATTGCTTATATTAACCCGGCAAACGGAAACGAGACGCCCGGATTCGTCATGCAGGGCGACCAGATAATCATGAATGAGGCGTTCCTGAAATACCTGAGCGCGCCGACCATTACCAGTGGCGGGAATCCTCCGGCATTTTCCCTGACGCCGGATGGAAAGCTGACTGCGAAAAATGCGGATATCAGCGGCCATATCAACGCTGTATCTGGCTCGTTTACGGGAGAAATCAATGCCACCTCCGGTAAGTTTTCTGGCGTGATAGAAGCAAGAGAGTTTGTCGGTGATATCTGCGGCTCAAAAGTCATGCAGGGCGTGAGCATCAGGGCGACGAACGACGAACGCAGCACCTCAACACGGTATACCGACAGCGCCACCTATCAGATAGGGAAAACCATCACGGTGATGGCTAACTGTGAGCGTAACGGTGGCTCCGGTGCCATCACAGTCACGATAAATATTAACGGCCAGGTGAAAACGGCGGAGGTTATGCCGTATACCGCAGGGATTCCGGCCATGTATCAGACCGTCGTCTTTTCGGTCTACACCACTTCACCTGTCGTGGATATCAGCGTCTCTCTGAGGGTCCGTGGGCAGTACACCACGTCTGCTTCCGTCTGGCCGCTGGTGATGGTTTCCCGGTCGGGGAGCAACTTCACAAACTGA

Tertiary structure

PDB ID
d3287e27154018c3cea061dc89743573238c95cbccea7c35f93ea17bc1ca86c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7108
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Refined annotation of the phage genomes integrated into the Salmonella typhimurium LT2 genome Lingohr,E.J., Villegas,A. and Kropinski,A.M. 2011-05-19 — GenBank