Protein

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Genbank accession
CAB4162271.1 [GenBank]
Protein name
Collagen triple helix repeat
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MADVKISELPLYSGDPSGVYLVMNNAGETQTFRVLRETVLGANGSSGTSGSSGTSGTAGTGGSSGTAGTSGSSGSSGTSGSSGTSGINGSSGTSGINGTSGSSGTSGTNGSSGTTGSSGSSGSSGTSGSSGSSGTSGSSGSSGTSGLNGTSGSSGTSGSSGSSGTSGTNGSSGTSGSSGTSGTNGSSGTSGSSGTSGSSGSSGSSGSSGSSGTSGLNGSSGTSGINGTSGSSGTNGTSGTNGSSGSSGSSGTSGTSGANGQSNSFFNYQAKDTSTSGDPSSGHLLWNNVTQASATGINISEVDQDSNNIDIFISNLVIGTVFTIQDQAAHTNYQSWSITSKTDNSTYWSLGVSLVTSTYTFTNNQQVLFIITSTPSGTSGTSGINGTSGSSGTNGTSGTNGSSGTSGSSGTSGSSGSSGTSGSSGTSGQNGSSGTSGINGSSGTSGSSGTSTDIVLTNPQTSNYTLALTDQNKLVEMNSATATSITIPPNSSIAFPTGAQVLVSRIGLGAVSIVAGSGVTVNSANGYLDILSQYGAGSLLKTATDTWYFFGDNNGTSGSSGSSGTSGVGTSGSSGTSGSGTSGSSGTSGQNGSSGTSGLNGSSGTSGQNGSSGSSGTSGTNGSSGSSGTSGVGSNGSSGTSGTSGSGSSGTSGSSGSSGSSGTSGIGTPGSSGTSGTSGGGGGASAIRVSGVSLTAASWTLGATYYEYSYVNASILTTTYVDFVPNNASVNTAFIARVLPYIASTSGGATLYAVYAPSDAIVGDVIITPVT
Physico‐chemical
properties
protein length:771 AA
molecular weight: 71218,72840 Da
isoelectric point:4,20270
aromaticity:0,04540
hydropathy:-0,30091

Domains

Domains [InterPro]
IPR050938
40–453
IPR050938
IPR008160
41–99
IPR008160 IPR008160 IPR008160
CAB4162271.1
1 771
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured Caudovirales phage
[NCBI] 		2100421 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CAB4162271.1 [NCBI]
Genbank nucleotide accession
LR796735 [NCBI]
CDS location
range 21738 -> 24053
strand -
CDS
ATGGCAGACGTTAAAATATCCGAATTACCTCTATACTCTGGAGACCCTAGTGGAGTATATTTAGTAATGAATAATGCAGGTGAGACTCAAACATTTAGAGTTTTACGAGAAACTGTATTAGGAGCTAATGGTTCTAGTGGAACTAGTGGTTCAAGTGGTACCTCCGGTACAGCAGGTACAGGTGGTTCTTCAGGAACTGCAGGTACATCAGGTTCTAGTGGTAGTTCAGGTACATCTGGTTCAAGTGGAACTAGTGGTATAAATGGTAGTTCAGGTACAAGTGGTATAAATGGTACATCTGGTTCTTCAGGAACTTCTGGTACTAATGGTTCAAGCGGAACGACCGGTTCAAGTGGTTCTAGTGGATCAAGTGGAACTTCTGGTTCTAGCGGTAGTTCTGGAACGTCTGGTTCTAGCGGTAGCTCTGGAACTTCAGGATTAAACGGTACATCTGGTTCTAGTGGTACATCTGGTTCTAGTGGTTCTAGTGGAACTTCTGGTACAAATGGTTCTAGTGGAACTTCAGGTTCAAGTGGAACTTCTGGTACAAATGGTTCAAGCGGTACTTCAGGTTCAAGTGGAACTTCCGGTTCTAGTGGTAGTTCAGGTTCAAGCGGTAGTTCAGGTTCAAGCGGAACTTCTGGTTTAAATGGTTCAAGTGGAACATCAGGTATAAATGGAACTTCAGGTTCTTCAGGTACAAATGGTACTTCTGGTACAAATGGTTCTTCAGGTTCTTCAGGTTCAAGTGGAACTTCTGGTACAAGTGGTGCAAATGGACAGTCAAATTCATTTTTTAATTATCAAGCAAAAGATACTTCAACAAGCGGAGACCCAAGTTCAGGACACTTACTTTGGAATAATGTAACTCAAGCAAGTGCAACTGGAATCAATATTAGTGAAGTTGATCAAGATAGTAATAATATTGATATTTTTATATCTAACCTTGTTATAGGTACAGTATTTACAATACAAGATCAAGCGGCTCATACTAATTATCAATCATGGTCAATTACTTCAAAAACAGATAATAGCACATATTGGAGTTTAGGTGTCTCTTTAGTTACATCTACTTATACATTTACAAATAATCAGCAGGTACTTTTTATTATTACATCAACTCCTTCTGGAACTTCTGGAACATCAGGTATAAATGGAACGTCCGGTTCATCTGGCACAAATGGTACATCTGGTACAAATGGTTCAAGTGGTACTTCAGGTTCAAGCGGTACTTCAGGTTCAAGTGGTAGTTCAGGAACATCAGGTTCAAGTGGAACTTCTGGTCAAAACGGTTCTAGTGGTACATCAGGTATTAATGGTTCAAGTGGAACTTCTGGTTCTAGTGGTACAAGTACAGATATTGTACTTACAAATCCACAAACTTCTAATTATACATTGGCCTTAACTGACCAAAATAAATTAGTAGAAATGAATTCTGCTACTGCTACAAGTATTACAATTCCACCAAATAGTAGTATTGCTTTTCCAACTGGTGCTCAGGTCTTAGTAAGTAGAATTGGTTTAGGTGCCGTAAGTATTGTTGCTGGTTCTGGTGTAACCGTTAATTCAGCTAATGGATATTTAGATATTCTTAGTCAATATGGAGCAGGTAGTTTACTTAAAACTGCAACAGATACATGGTATTTCTTTGGAGATAATAATGGTACTAGCGGTAGTTCAGGTTCTAGTGGAACTAGTGGAGTAGGTACATCAGGTTCAAGTGGTACTAGTGGATCAGGAACAAGTGGTTCTTCAGGAACTTCGGGTCAAAATGGTTCAAGTGGTACCTCTGGATTAAATGGTTCTTCAGGAACGTCAGGTCAAAACGGTTCTTCAGGTTCAAGTGGAACTTCAGGTACAAATGGATCTAGTGGTTCAAGCGGAACTAGCGGTGTAGGATCAAATGGTTCTAGTGGAACTTCTGGAACATCAGGTTCAGGTTCATCAGGTACTTCAGGTTCAAGCGGAAGTTCAGGCTCTAGCGGAACTAGTGGAATAGGTACACCAGGTTCTAGCGGAACTTCTGGAACTAGTGGAGGTGGTGGTGGAGCCTCAGCAATAAGAGTAAGCGGAGTTTCATTAACTGCTGCAAGTTGGACTCTAGGAGCAACCTATTATGAATACTCATATGTAAATGCAAGTATTCTTACTACAACATACGTAGACTTTGTTCCGAATAATGCAAGTGTAAATACCGCTTTTATAGCAAGAGTACTTCCTTATATAGCATCAACTTCTGGTGGAGCAACTTTATATGCAGTATATGCACCAAGCGATGCAATAGTAGGAGACGTAATAATAACACCTGTAACATAA

Tertiary structure

PDB ID
bdf3172e15844f7f4ee715ed1f8f77a3bed1613b69890b9b2ba5f8f05b25d69b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2514
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50