Protein

View in Explore
Genbank accession
QDJ97866.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
TSP
Evidence RBPdetect2
Probability 0,93
TF
Evidence Phold
Probability 1,00
Protein sequence
MEDSILIIVPQKTYIPGKGMGPINKPYYVDRNTLDYYDLMNIQYVKVNKNEYVDLNSDGEYDVADYFSIEDFIKQKYLQVNEAFKQIKIISTDINNINEKAGEKLNLIKENLIDDDNLNSYLSELDSFKYSIEDKKLDLQSEKEDVISTIEDMNNKLSSMKDTLTDFETVREQFNSNYNNTMSLNDEMEKLSETTNYVKNMENDVVKVEEKLNLIKDKSEELKLAQDSFNSKIDDFENKLLDYKENLKNYMVENAEMYKGDPGIQGPKGDPFKYSDFTEEQLNGLKGDPFEYSDFTQEQLSELKGEKGGPFEYSDFTQEQLDLLKGEKGDPFEYSDFTEEQLNGLKGDTGKIGTQGLQGLPGLDGNYAPTLPITVRKPNDFNYGNEILKNRIVTDGKGTFGVKYDITTNRLSGGTTYYLDAVNGNDSNDGLSKENPFKSFKVVIPKVNDNDTIMVADGNYFRIGGTLITKAFNKSINIIGTGNNVNIIMADEPSWTLTSGKNRTYEFSRSATDKVVTLDNSIDIKKVSSIDEVESTPNSWFTDGTKVYSNINDNKPSNSNVIPLISSSNIQLTSLASNIYFENLNIYGGRNCIELNLTSNNSTFFKKCNFYHSASSYNGLAIVGGKDIILDSCKGNYNSFDGLNYHIGADGSKPNIIEINCIGMDNGTDKGLNGVKSNNGSTTHEGLKIIRINGIYGRNDGGNVADVNEGTQSWNLGCIAFESYQGKDFQASSGGNLFLDECIAYGSENSINIGDTDSKVYTRGGRYQNKLIVSTEIKY
Physico‐chemical
properties
protein length:779 AA
molecular weight: 87153,47760 Da
isoelectric point:4,59739
aromaticity:0,09756
hydropathy:-0,65237

Domains

Domains [InterPro]
G3DSA:1.10.287.2610
75–348
G3DSA:1.10.287.2610 IPR011050
Coil
136–156
Coil Coil
QDJ97866.1
1 779
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PALS_2
[NCBI] 		2591344 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ97866.1 [NCBI]
Genbank nucleotide accession
MN091626.1 [NCBI]
CDS location
range 224474 -> 226813
strand -
CDS
ATGGAAGATAGTATACTAATTATAGTTCCTCAAAAAACTTATATTCCAGGTAAAGGTATGGGACCTATAAATAAACCTTATTATGTTGATAGAAATACATTAGATTATTATGATTTAATGAATATTCAATATGTAAAGGTAAATAAAAATGAATATGTTGATTTAAATTCAGATGGAGAATATGACGTAGCTGATTATTTCTCTATTGAAGATTTTATAAAACAGAAATATCTTCAAGTGAATGAGGCTTTTAAACAAATAAAAATAATATCTACTGATATAAATAATATTAATGAAAAAGCAGGAGAAAAACTTAACTTAATCAAAGAAAATTTAATTGATGATGATAATCTTAATTCATATTTGAGTGAGCTAGATAGTTTTAAATATAGTATTGAAGATAAAAAATTAGATTTACAATCTGAAAAAGAAGATGTAATTTCAACAATAGAAGATATGAATAATAAATTAAGTAGCATGAAAGATACTTTAACTGATTTTGAAACTGTAAGAGAACAATTCAATAGTAATTATAACAATACAATGAGTCTTAATGATGAAATGGAAAAACTTAGTGAGACTACAAACTATGTTAAGAATATGGAAAATGATGTAGTTAAAGTTGAAGAAAAATTAAATCTTATAAAAGATAAATCTGAAGAATTAAAATTAGCACAAGATTCATTTAACAGTAAAATAGATGATTTTGAAAATAAATTATTAGATTACAAAGAAAATCTTAAGAATTACATGGTAGAAAATGCTGAGATGTATAAAGGTGATCCAGGTATACAAGGTCCTAAAGGCGACCCCTTCAAATACTCTGATTTTACTGAAGAACAGTTAAATGGATTAAAAGGAGATCCTTTCGAGTATTCTGATTTTACTCAAGAACAATTATCCGAGTTAAAAGGTGAAAAAGGTGGCCCTTTTGAATATTCCGATTTTACTCAAGAACAATTAGATCTATTAAAAGGTGAAAAGGGAGATCCTTTCGAGTATTCTGATTTTACTGAAGAACAGTTAAATGGATTAAAAGGTGATACAGGTAAGATTGGAACTCAAGGTCTACAAGGTTTACCCGGTCTTGATGGTAATTATGCACCTACCCTTCCAATAACAGTTAGAAAACCTAATGATTTCAATTATGGTAATGAAATATTAAAAAATAGAATTGTTACTGATGGAAAAGGTACTTTTGGAGTGAAATATGATATAACTACTAATAGATTATCAGGCGGAACTACTTACTACTTAGATGCTGTTAATGGTAATGATTCTAATGATGGTTTATCTAAAGAAAACCCATTTAAATCTTTTAAAGTAGTAATACCTAAAGTTAATGATAATGATACAATTATGGTTGCTGATGGTAACTATTTTAGAATTGGCGGCACATTAATTACAAAAGCATTTAATAAGAGCATTAATATAATAGGCACAGGTAATAATGTGAATATTATTATGGCTGATGAACCTTCATGGACACTAACTTCTGGTAAAAATAGAACTTATGAATTTAGTAGATCTGCTACCGATAAAGTTGTAACGCTAGATAATAGTATTGATATAAAGAAAGTAAGTAGTATTGATGAAGTTGAAAGTACACCTAATTCATGGTTTACTGACGGTACTAAAGTTTATTCCAATATTAATGATAATAAACCTTCAAATAGTAATGTAATACCTTTAATATCTTCTTCGAATATACAGTTAACAAGTTTAGCTTCAAATATATATTTTGAAAATTTAAATATATATGGCGGGAGAAACTGCATTGAATTAAATTTAACTTCAAATAACAGTACATTCTTTAAGAAATGTAATTTTTATCATTCTGCTTCAAGTTACAATGGTCTTGCTATTGTTGGCGGTAAAGATATTATTCTTGATAGCTGTAAAGGTAATTATAATAGTTTTGACGGTTTAAATTACCATATTGGTGCTGATGGTTCTAAACCTAATATAATAGAGATTAATTGTATAGGAATGGATAATGGAACCGATAAAGGATTGAATGGTGTTAAATCAAATAACGGATCAACTACTCATGAAGGTTTAAAAATCATTAGAATAAATGGTATATATGGAAGAAATGATGGAGGTAATGTAGCTGATGTAAATGAAGGTACACAATCGTGGAATTTAGGATGTATCGCATTTGAAAGTTATCAAGGAAAAGACTTCCAAGCTTCATCAGGAGGTAATTTATTCTTAGATGAATGTATAGCTTATGGATCTGAAAATAGTATTAATATAGGTGACACTGATAGTAAAGTTTACACTAGAGGTGGAAGATATCAAAATAAATTAATCGTATCTACAGAAATCAAGTATTAA

Tertiary structure

PDB ID
621b7e714f2e08658ab5d46303a2367cbe695c81c4b81a7ea338e1daa2d1f4c8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6852
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genomic Analysis of PALS2, a Novel Staphylococcus Jumbo Bacteriophage Lee,Y., Son,B., Cha,Y. and Ryu,S. 2021 — GenBank