Protein

View in Explore
Genbank accession
YP_009792010.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,66
TF
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MAQMVKQTTRLYDMADLPKIYGSKGGSQKQHTPVEQEDNLISLNKIKVLLAVADGEVDSSFSLKDLYLADVPVQNQDNSFNYEGVTAEFRPGTQSQDYIAGLDGAASEIQVSREINNDTPYIIAVNNSQLSAIRVKLFWPRLVKQEENGDLNGTTCEYAIDLSVNGSAYTEYTRGVANGKTTTGYDRSIRVNLPAEFSSALVRIRKLTPDSTSSTLVNGMQITTYQEVIDAKFRYPLTALVYVEFSSDLFPNGLPPIAIKKRWKIIRVPTNYTPATRTYSGTWDGTFKMAWSDNPAWVLYDLVVSQRYGLDQRELGVEIDKWGLYEAAQFCDQMVPDGKGGMEPRYTCNVVIQQKVEAYQIIRDICSIFRGLTFYDGEQIGIVVDRPRQPSYVFTNDNVVDGLFNRTFASDKSLYTTANVQFDDVENNYQQDVEPVFDLEATRRFGYNPVDLTAIGCVRRSEANRRGRWLLKTNLRSETITFTTGLEGMIPMIGDVIAVNDQAWSSNYTLNLSGRIVEATGLQVFVPFAIDADPGDRILINKPDGSPEYRTIASVSADKLTLELNTAFSFTPQPDTVFAIDKQNLALQQYVVTGIQKANTDGEDSFQYSITAVQYDPNKYDEIDYGVNIDDRPTSIVDPDRILPPKNITVTSYSKVVQGMSVETMVIGYDKVQYAKTYNVQWRKNNGNWINVPETANTEVDIEGIYAGIYDVRVRAVTDQKSVSAWSEITTVSLTGKVGEPEPLQVITASDDEVFGIRVKWGFGNNSGDTAYVELQQVADNGDGTYTPENASLLTLVPYPQFEYWHTTLPAGKVIWYRGRTIDRIGNVSQWTDFVRGMASDDVSAIIGEIKVDIENSDGYKYLLQNAIDANADIQNQAEAIIENALANDTDVRVMRRENGARKAEYRQAVNLIANETEARVEALTQLKAQIDDEIVGQITTIETALATETEARATADTALSARLGDNEAALNQKLDSYATVEGVGVQYGVKLGLKYNGVEYGAGMSMELTGSGGNVRSQFIFDANRFAISNGISSGSGQWSLPFVVENNQVFIQSAVIQDGSITNAKIGGAIQSNNYVFGSVGWRLDKGGTFENNGSTAGEGRMKQTNETISVADANGRLRVQIGRLTGVY
Physico‐chemical
properties
protein length:1131 AA
molecular weight: 125093,10030 Da
isoelectric point:4,67520
aromaticity:0,09284
hydropathy:-0,33643

Domains

Domains [InterPro]
IPR053171
19–898
IPR053171 Coil IPR015406
IPR055385
106–231
IPR055385 IPR032876 IPR013783 Coil
IPR003961
644–732
IPR003961
IPR003961
644–738
IPR003961
IPR036116
675–732
IPR036116
YP_009792010.1
1 1131
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf12
[NCBI] 		2024315 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009792010.1 [NCBI]
Genbank nucleotide accession
NC_047848.1 [NCBI]
CDS location
range 20762 -> 24157
strand -
CDS
ATGGCACAAATGGTTAAACAAACAACGAGGTTATATGATATGGCCGATTTGCCAAAGATTTATGGAAGCAAGGGTGGTAGCCAAAAGCAGCACACACCTGTAGAGCAAGAAGATAACCTGATTTCACTCAACAAGATTAAGGTGCTACTGGCCGTTGCTGATGGCGAGGTTGACTCAAGCTTTTCACTTAAAGACCTTTACCTTGCTGACGTTCCCGTGCAAAACCAGGATAACTCATTCAACTACGAAGGAGTGACCGCAGAATTTCGCCCTGGCACTCAGTCTCAAGACTATATCGCCGGACTAGATGGTGCAGCATCAGAGATTCAGGTTAGCCGCGAGATTAACAACGATACACCTTACATCATAGCAGTAAACAACAGTCAGCTATCAGCAATTCGCGTCAAGCTGTTCTGGCCTAGACTCGTTAAGCAAGAAGAGAATGGAGATTTAAATGGCACAACATGTGAATATGCAATCGATTTATCAGTTAATGGCTCAGCGTACACTGAATATACCAGAGGCGTGGCTAACGGTAAAACTACAACAGGTTACGACCGCAGTATCAGGGTTAACTTACCAGCCGAGTTTAGCAGCGCTCTTGTTCGTATTAGGAAGTTAACGCCAGACTCAACAAGCAGCACTCTGGTAAACGGAATGCAGATTACGACCTATCAGGAAGTAATTGACGCCAAATTCCGTTATCCACTTACAGCGCTTGTTTATGTAGAGTTCAGTTCAGACCTTTTTCCTAACGGGTTGCCGCCTATCGCAATCAAGAAAAGGTGGAAGATAATTAGAGTCCCAACAAACTACACCCCAGCAACGCGGACTTATAGCGGAACTTGGGATGGAACTTTCAAGATGGCATGGTCAGATAACCCGGCGTGGGTTTTATATGACCTGGTAGTCAGTCAGAGGTATGGGCTTGACCAGCGAGAGCTTGGAGTTGAGATTGATAAGTGGGGTCTGTATGAAGCTGCGCAATTCTGCGACCAGATGGTCCCGGATGGTAAGGGTGGAATGGAGCCGCGATATACTTGTAACGTTGTCATTCAGCAGAAAGTGGAAGCGTATCAGATTATTCGTGACATCTGTTCCATTTTCCGTGGATTAACCTTCTATGATGGTGAGCAAATTGGGATTGTAGTTGACAGGCCGCGCCAACCAAGTTACGTATTCACAAATGATAACGTAGTCGATGGTTTATTCAACCGCACGTTTGCTAGTGATAAGAGTTTGTACACGACTGCCAACGTTCAGTTTGATGATGTAGAGAACAACTACCAGCAAGACGTAGAGCCAGTGTTTGACCTTGAGGCAACTCGCAGGTTTGGGTATAACCCTGTAGACCTGACTGCAATTGGATGCGTAAGGCGTAGCGAGGCTAACCGTCGTGGTCGTTGGCTCCTTAAAACGAACTTGCGTAGCGAAACAATAACATTCACCACCGGACTCGAAGGTATGATTCCTATGATTGGTGATGTCATTGCTGTTAATGACCAAGCTTGGTCAAGCAATTACACGTTAAACCTTTCTGGTCGAATCGTGGAGGCTACTGGTTTGCAGGTTTTTGTTCCGTTCGCTATTGATGCTGACCCTGGCGACAGAATCTTAATCAACAAGCCAGATGGAAGCCCGGAGTACAGGACTATCGCTTCAGTATCTGCCGATAAGTTGACGCTTGAGCTGAATACAGCATTCAGCTTCACGCCGCAGCCAGATACGGTATTTGCAATCGACAAGCAGAATCTTGCTTTACAGCAATATGTTGTGACCGGGATTCAAAAAGCCAACACGGACGGAGAGGATTCATTCCAGTACAGCATCACGGCTGTTCAGTATGACCCTAACAAGTACGATGAGATTGACTACGGAGTAAACATCGACGACAGGCCAACAAGCATAGTTGACCCTGACAGGATTTTACCACCGAAGAACATTACGGTTACTAGTTACAGCAAAGTAGTTCAGGGCATGAGCGTTGAGACGATGGTTATCGGTTACGACAAGGTGCAGTATGCGAAAACATACAACGTGCAATGGCGTAAGAATAACGGAAACTGGATTAATGTACCGGAGACGGCTAACACTGAGGTTGATATTGAAGGCATCTACGCTGGCATTTACGACGTCAGGGTTCGTGCTGTAACTGACCAAAAATCAGTATCGGCATGGTCTGAAATTACAACAGTTAGCTTGACTGGTAAGGTTGGTGAGCCTGAGCCATTGCAGGTCATCACGGCTTCAGATGATGAAGTATTTGGCATCCGTGTTAAGTGGGGTTTTGGCAATAATAGTGGTGATACTGCTTATGTGGAATTGCAGCAAGTTGCTGATAATGGCGATGGGACATACACCCCTGAGAATGCCTCATTGTTAACTCTCGTTCCTTACCCTCAGTTTGAGTATTGGCACACGACGCTCCCGGCAGGAAAGGTGATCTGGTATAGGGGAAGAACGATCGACAGGATTGGTAACGTATCGCAATGGACTGATTTTGTCAGGGGTATGGCTTCGGATGACGTGAGTGCAATCATTGGAGAAATTAAGGTTGATATTGAAAACTCAGATGGATACAAGTATCTACTCCAGAACGCGATAGATGCAAATGCTGACATTCAGAACCAGGCCGAGGCAATAATTGAGAACGCATTGGCAAACGATACTGATGTTCGTGTTATGAGGCGTGAAAATGGAGCCAGGAAGGCTGAGTATCGTCAGGCTGTTAATCTAATAGCCAACGAAACTGAGGCTCGTGTAGAGGCTCTTACGCAGCTTAAGGCGCAAATTGATGATGAGATTGTTGGTCAGATTACAACTATCGAAACAGCGCTAGCAACCGAGACGGAAGCGAGGGCTACTGCTGATACGGCTCTCAGCGCAAGGCTTGGTGATAACGAGGCGGCTTTGAATCAGAAGCTCGACTCTTACGCTACAGTTGAAGGCGTTGGTGTTCAGTACGGCGTTAAGCTAGGCCTTAAGTACAATGGAGTTGAGTACGGTGCTGGCATGAGCATGGAGTTAACCGGTAGTGGTGGAAATGTTCGTAGTCAGTTCATTTTCGATGCTAACAGGTTTGCAATCAGTAACGGCATTAGTTCTGGTTCCGGTCAGTGGTCGCTGCCTTTCGTTGTCGAGAATAACCAGGTATTCATACAAAGCGCGGTTATTCAGGACGGTTCAATCACTAACGCGAAGATTGGTGGTGCAATTCAGTCTAACAACTACGTATTTGGCTCTGTCGGATGGAGACTTGACAAGGGTGGAACGTTCGAAAATAACGGCTCTACGGCTGGAGAGGGTAGAATGAAGCAAACAAATGAGACAATATCTGTTGCTGACGCTAACGGAAGGCTTCGTGTTCAGATTGGCCGTTTGACTGGAGTTTACTAA

Tertiary structure

PDB ID
7c73ca1af428dae4ec1799db9ca4c043f97470f3420a14cc374798ff5483e25a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank