Protein

View in Explore
Genbank accession
AIA64538.1 [GenBank]
Protein name
putative collagen triple helix repeat-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MAQYEDKVVEVLVTLPEPSASTSGGSGAPFTGIETQDTVSTTLIGDGTQSSPLQANINISRRSGNRLQVVSTSSEQGLYVAGSDTKVSAKDGNTVTYISAQEAANAGNPALEGVYSDPVNVSTTSPKKTLEIKADPTGKAKTQIDVIVDPDSMNALKVGTAGLSVPVSVAQDNTLEIRQGALYVRPQETKISQDPNNKIQVKSDGIYVDTVKGDKGDTGATGPAGPQGPQGDPGPQGPQGPQGDKGDKGDTGDVGPAGATGPAGAQGARGPEGPKGPAGIGINVIDQLDEVSQLPAVAEMELGDTYVIGQNFWTVVNENNVKQWKDIGNFAGPEGLSAYEVAEGAGFVGTVDEWLESLKGADGIGLQILGSFPDPSYLPDEGNKPGDCYIIQDMMYVWTGDEDGWQTVGQIGPEGKSAYQVWLANGHTGSQVDFLNSLIGPQGPKGDKGDKGDTGADGTNANAINLLGKVADEASLPAGADAGDAYLIGTSVWVSTGNDNWENLGAFQGPKGDQGDVGPAGPKGDKGDAGDVGKDNYALAVENGFQGSLSDYLASLKGAKGDTGPQGPRGLTGPQGAKGEVGEGLAILGSKADPSELPSNPVTGDAWLIGEDLYIFNGTAWENAGPVRGPKGDTGATGPAGAKGDKGDQGEKGDKGDQGDVGPAGPEGPQGTGLTPKGSVPTVADLPDQDNTKGDFWAVEEDGNGYAWDGLQWVVTGLTRGPQGEKGDKGDKGDKGDQGDTGATGAGVIPKGTVTSAATLPPTGNTVGDYYVTDDNGTAYSWNGTDWVDLGVVRGPQGPQGDKGDTGDQGPQGVKGDTGATGPQGPQGDIGPGVEIMGKLNSTSELPSTGQLGQGYLIDGDFWGWTGSAYENLGRIQGPVGPTGPTGDPGPTGPQGVKGDKGDQGSLWIVFDHDPGPADGRVGDYFLNSSTLQFFRKTNATTWAPMGYMGGGNVYDSPKDGKQYARIDGDWELVEVLEAPQDNGYYVRANGAWQKLDRYDLRVMSATGALDASVSNVFTVDGTTSKAITISNLPAGRAMTVVVKFLGKGGSMTWPSPMAWSNGTQPALGTTRTILTFFWDGTDLTGVQAMTVD
Physico‐chemical
properties
protein length:1093 AA
molecular weight: 111988,02030 Da
isoelectric point:4,26852
aromaticity:0,06587
hydropathy:-0,52726

Domains

Domains [InterPro]
IPR008160
219–274
IPR008160 G3DSA:1.20.5.320 IPR008160 G3DSA:6.20.230.10
IPR050149
508–918
IPR050149
AIA64538.1
1 1093
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage CR8
[NCBI] 		1327934 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Cronobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIA64538.1 [NCBI]
Genbank nucleotide accession
KC954774 [NCBI]
CDS location
range 7063 -> 10344
strand +
CDS
ATGGCACAATATGAAGATAAGGTCGTGGAAGTTCTGGTGACTCTCCCGGAACCGTCTGCGAGCACCTCTGGTGGTTCTGGTGCGCCTTTCACGGGCATCGAAACCCAAGACACCGTATCCACCACGCTGATTGGTGATGGTACTCAATCCTCCCCTCTGCAAGCAAACATCAACATCTCCCGTCGTTCAGGAAACCGCCTCCAAGTGGTGAGCACCTCCAGTGAGCAGGGTCTGTATGTTGCTGGCTCCGACACCAAGGTGTCTGCTAAGGATGGGAACACCGTAACTTACATCTCCGCCCAAGAAGCTGCTAACGCTGGCAACCCGGCCCTGGAAGGTGTATACTCTGATCCGGTGAACGTGTCAACCACGTCACCGAAGAAGACTCTGGAAATCAAGGCTGATCCTACCGGGAAAGCCAAGACCCAAATCGACGTGATCGTTGATCCAGATTCCATGAACGCCCTGAAGGTAGGCACTGCTGGCCTGAGCGTTCCTGTTTCTGTGGCTCAAGACAACACGCTGGAAATCCGCCAGGGTGCTCTGTACGTTCGCCCGCAAGAGACTAAAATCTCCCAAGACCCAAACAACAAGATTCAAGTCAAGTCTGACGGGATTTACGTTGACACTGTAAAAGGTGATAAAGGGGATACCGGGGCAACTGGCCCGGCAGGCCCTCAAGGCCCACAGGGAGACCCGGGTCCTCAAGGTCCGCAAGGCCCGCAGGGCGATAAGGGCGATAAAGGTGACACCGGGGACGTAGGACCAGCGGGGGCAACTGGCCCGGCAGGGGCACAGGGTGCTCGTGGCCCAGAAGGTCCGAAAGGCCCGGCTGGTATTGGTATCAACGTCATCGATCAGCTTGACGAAGTTTCTCAGCTTCCTGCTGTTGCGGAAATGGAACTGGGCGACACTTACGTTATTGGACAGAATTTCTGGACCGTTGTCAACGAAAACAACGTGAAGCAGTGGAAGGACATCGGTAACTTCGCGGGGCCTGAAGGTCTGTCTGCTTATGAAGTTGCAGAAGGCGCGGGCTTCGTTGGTACTGTTGATGAGTGGCTGGAATCCCTGAAAGGGGCTGACGGTATCGGTCTGCAAATTCTTGGTTCCTTCCCTGACCCGTCCTATCTGCCTGATGAAGGTAACAAGCCGGGTGACTGCTACATCATCCAAGACATGATGTATGTGTGGACAGGTGATGAAGATGGATGGCAGACTGTAGGTCAGATTGGCCCAGAGGGTAAATCTGCGTATCAGGTATGGCTGGCTAACGGTCACACCGGATCACAGGTTGACTTCCTGAACTCCCTGATTGGCCCACAAGGACCGAAAGGTGATAAAGGCGACAAAGGTGATACGGGTGCTGACGGTACTAATGCCAACGCCATCAACCTCTTGGGTAAAGTCGCAGACGAAGCGAGCCTCCCGGCTGGTGCGGATGCAGGTGATGCCTACCTGATCGGAACTAGCGTTTGGGTATCCACTGGGAATGACAACTGGGAAAACCTCGGTGCCTTCCAAGGCCCTAAAGGTGATCAGGGGGATGTAGGCCCTGCTGGCCCGAAAGGCGACAAGGGAGACGCAGGTGACGTAGGCAAAGACAACTACGCATTGGCGGTAGAGAACGGGTTCCAAGGTTCCCTGAGCGACTACCTGGCATCTCTCAAAGGTGCGAAGGGCGACACTGGTCCTCAGGGTCCACGTGGTCTTACTGGCCCGCAGGGTGCGAAAGGGGAAGTAGGGGAAGGTCTCGCGATCCTCGGATCAAAAGCTGATCCTTCAGAACTGCCTTCCAATCCGGTAACTGGTGACGCATGGCTGATCGGAGAAGACCTGTACATCTTCAACGGCACTGCTTGGGAGAATGCAGGCCCTGTCCGTGGTCCGAAAGGTGACACCGGAGCCACTGGCCCGGCTGGAGCTAAGGGTGACAAGGGTGACCAAGGCGAGAAAGGCGACAAGGGTGACCAAGGTGATGTCGGCCCGGCTGGCCCAGAAGGCCCGCAGGGAACTGGTCTGACGCCGAAAGGTTCTGTTCCTACAGTGGCAGATCTTCCTGACCAAGACAACACCAAAGGCGACTTCTGGGCTGTAGAGGAAGATGGCAATGGTTACGCTTGGGATGGGTTGCAGTGGGTTGTTACTGGCCTGACTCGCGGCCCGCAAGGCGAGAAAGGCGACAAGGGCGACAAAGGGGATAAAGGTGATCAGGGGGATACTGGTGCCACAGGCGCAGGTGTTATTCCGAAGGGAACTGTAACCTCTGCTGCGACCCTGCCTCCTACCGGGAACACCGTCGGTGATTACTACGTCACTGATGACAATGGGACCGCATACTCTTGGAACGGGACAGACTGGGTTGACTTGGGCGTTGTGCGTGGACCGCAAGGACCGCAGGGCGACAAAGGTGATACCGGAGACCAAGGCCCACAAGGTGTGAAAGGTGACACTGGTGCTACAGGCCCTCAAGGCCCGCAAGGTGACATCGGACCTGGCGTTGAGATCATGGGTAAACTCAACAGCACTTCAGAACTGCCTTCAACCGGGCAACTGGGTCAGGGTTACCTGATTGACGGCGACTTCTGGGGATGGACTGGCTCTGCCTACGAAAACCTTGGACGTATCCAAGGCCCGGTTGGTCCTACTGGTCCTACTGGTGACCCAGGCCCTACAGGCCCACAGGGTGTCAAGGGTGATAAGGGTGATCAAGGTTCCTTGTGGATCGTGTTCGACCATGACCCGGGTCCTGCTGATGGTCGTGTAGGTGACTACTTCCTGAACTCCTCAACGTTGCAGTTCTTCCGCAAGACGAACGCAACCACTTGGGCACCGATGGGGTACATGGGTGGCGGTAACGTTTACGATTCCCCGAAAGACGGCAAGCAGTACGCTCGTATCGACGGGGATTGGGAACTGGTCGAAGTTCTGGAAGCGCCTCAAGACAACGGCTACTACGTCCGTGCGAACGGTGCGTGGCAGAAACTGGATCGCTACGACCTGCGTGTCATGTCCGCAACTGGCGCACTGGATGCTTCTGTATCCAACGTGTTCACCGTTGACGGAACCACGTCTAAGGCAATCACCATCTCCAACCTGCCAGCGGGTCGTGCGATGACTGTGGTTGTTAAGTTCCTCGGTAAAGGTGGGTCCATGACTTGGCCTTCTCCGATGGCATGGTCTAACGGCACCCAGCCAGCACTTGGTACTACCCGTACCATCCTGACGTTCTTCTGGGACGGCACGGACCTGACTGGTGTTCAGGCAATGACTGTAGACTAA

Tertiary structure

PDB ID
e31c2a5dcf986f8fb8628ce8f92777d71a2be025a525db451bb121bf191e184c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6602
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage CR8 Kim,Y., Shin,H. and Ryu,S. 2012-06 — GenBank