Protein

View in Explore
Genbank accession
UXR08313.1 [GenBank]
Protein name
capsid and scaffold
RBP type
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence Phold
Probability 1,00
Protein sequence
MALNFTTITDNNVIKDLTTQVNNIGEELTKERNIFDITEDLVYNFNKSQRIKLTDDKGLAKSYGNVTELKEIKEPGYYYVSARTLATLRDKPDIETLNAVLQVLPLNSSTSVVQHLYTLSTNNNQIKTMYRYVSGNSSSEWQFIQGLPSNKNTIISGSNIKDLTSPGVYFVTGMTGGMPSGVSSGFLELNVDTSDNRLAKLTDAETGKTYTSVKKPLGTYTEWVKDLEPKDMQKYLIGNINDDGRVSFPLMVSTSDNKTFQQAVIDHVDKTGQTMFTFYVQGGVLGSPMSNSCRGIFISDTPNTASFQGIYNAVGVDGRNVTGSVVGNNWVSPKASPSYKELWTGAQSFLAKGSTKDLSDDISNYSYVEIYTKHKTAEKTKGSDVTGTICHKFYLDGSGTYVCSGTFVSGDRTDKKVPVTEFYRVGISFKGSTWTIVDSATQSNKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50428,94280 Da
isoelectric point:6,91085
aromaticity:0,09607
hydropathy:-0,39803

Domains

Domains [InterPro]
IPR057110
337–458
IPR057110
UXR08313.1
1 458
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_ScaM-V1SC04
[NCBI] 		2983349 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UXR08313.1 [NCBI]
Genbank nucleotide accession
OP297178 [NCBI]
CDS location
range 109328 -> 110704
strand -
CDS
ATGGCATTAAATTTTACTACAATAACTGACAACAATGTTATTAAAGACCTGACTACTCAGGTCAATAACATTGGGGAAGAATTAACAAAGGAAAGAAATATATTTGACATTACAGAAGATTTAGTATATAATTTTAATAAGTCACAAAGAATTAAACTAACTGATGATAAAGGACTAGCTAAGTCTTACGGAAATGTAACAGAACTTAAAGAAATAAAAGAACCGGGTTACTACTATGTTAGTGCAAGAACATTAGCAACATTAAGAGATAAACCAGATATTGAAACACTAAATGCGGTACTACAGGTACTACCTTTGAATTCTTCTACTAGCGTAGTACAACACTTATACACATTATCTACTAACAATAATCAAATTAAAACAATGTATAGATATGTTTCAGGCAACTCGAGTTCAGAATGGCAATTTATTCAGGGACTACCTAGTAATAAAAATACTATTATATCGGGCTCTAATATAAAAGATTTAACTTCTCCAGGTGTATACTTTGTGACAGGTATGACCGGAGGGATGCCTAGTGGAGTAAGTTCAGGATTCTTGGAACTAAATGTAGATACGAGTGATAATAGATTAGCTAAGTTAACTGATGCTGAAACAGGTAAAACCTACACAAGCGTTAAAAAACCTTTAGGAACTTACACAGAATGGGTTAAAGACTTAGAACCTAAAGATATGCAGAAATATCTTATAGGTAATATTAATGATGATGGTCGGGTTTCTTTCCCGCTAATGGTTAGTACCTCTGATAATAAAACATTCCAACAGGCTGTTATAGACCACGTTGATAAAACAGGGCAAACAATGTTTACCTTCTATGTTCAAGGTGGTGTACTCGGCTCACCAATGTCTAATAGCTGTCGTGGTATATTTATATCTGATACACCGAATACAGCTAGTTTCCAAGGTATTTATAATGCAGTAGGCGTAGACGGTAGAAATGTCACAGGTTCAGTGGTAGGCAATAACTGGGTATCACCTAAAGCCTCTCCGTCATACAAAGAATTATGGACGGGAGCACAATCATTTTTAGCTAAAGGGTCTACTAAGGATTTATCAGATGACATCAGTAACTATTCTTATGTAGAGATTTATACTAAACATAAGACAGCGGAGAAGACTAAAGGTAGTGATGTTACAGGTACAATCTGTCATAAATTTTATCTAGACGGTAGTGGAACCTATGTTTGCTCAGGTACCTTTGTATCTGGGGATAGGACAGATAAAAAGGTACCTGTTACCGAGTTCTATAGAGTAGGTATATCTTTCAAAGGCTCAACATGGACTATTGTAGATAGTGCAACACAAAGTAATAAAACTCAATACGTTACGAGAATTATAGGTATTAATATGCCATAG

Tertiary structure

PDB ID
6e8abdb3d859ee84d95b5b3deed2b616c8dcdb5500e5e8b4b84ccddb1da24655
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7863
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An innovative bacteriophage-based decontamination to control environmental colonization of intensive care units with Staphylococcus capitis : an in vitro proof-of-concept Chavignon,M. and Kolenda,C. 2022-11-16 — GenBank