Protein

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Genbank accession
UGL60465.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,80
TF
Evidence RBPdetect2
Probability 0,92
TF
Evidence Phold
Probability 1,00
Protein sequence
MPHLKAYDKEGNILAIGYDVESDQGSVIIPNLKPHTKYPEGEFYISWEGDNYESEKVVVPEFTTLESPYKEIIFYAKDILTVKPKTSYDIAVDNGFEGTEEEWVKSIKGEQGPQGPKGDKGEPGEKGDKGGDGIDGEIGPQGPTGPMGPKGDKGNTGEKGEKGNGSVNQTRLPQILREQYFENLETPVVDSDNGIIEQINPLNAQTVNYYFIGNVLDINEPETKTTDFTQFQQGIVTMDWTDSSVSLSNDKIQTYINTTNTAFALLHIYNGKPVLDKAYISLSMRENYMNDLIKTFVNKNDFEIKLGKGIIFDISRRFTNLATLKEIVDEISANKGDYLQLHFSDDQGYSIHSEILGQNGTTSNDKYLTKKEIMELIDYANGKNVMIVPDFDVPGHSQGWLDLLKAKNPDLYSNVVSDYDTGLADYYGNDIAAKFIEDLIEEITTMFYQPKYGDRLVFSIGADEVPGVNVAQIDYVNFVNRMAKKVYERGYYPRMWNDCLTDDGIKMLNDNIEVSYWLQGLSSAEKFIEENKMVVNSNFYSQVYSPSLNGKAEGAIDEQIDYIRSNFAENKFCEKENPYTIVDTKDNLKGTAFTFWNEDGNELTDEELLEQVIPIIKAYFTLV
Physico‐chemical
properties
protein length:623 AA
molecular weight: 70211,40110 Da
isoelectric point:4,47695
aromaticity:0,10915
hydropathy:-0,54976

Domains

Domains [InterPro]
IPR008160
109–163
IPR008160 G3DSA:3.20.20.80
IPR025705
299–316
IPR025705 IPR025705 IPR025705
IPR025705
308–541
IPR025705
IPR017853
309–604
IPR017853
IPR015883
309–600
IPR015883
UGL60465.1
1 623
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SurM-PSU4
[NCBI] 		2894348 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UGL60465.1 [NCBI]
Genbank nucleotide accession
OL436245.1 [NCBI]
CDS location
range 10239 -> 12110
strand -
CDS
ATGCCACATTTAAAAGCTTATGATAAAGAAGGTAATATACTAGCTATAGGTTATGATGTAGAATCTGACCAAGGTTCTGTTATTATACCTAACCTAAAACCACACACAAAATACCCTGAAGGGGAATTTTATATTTCTTGGGAAGGGGACAACTATGAATCAGAAAAAGTAGTTGTTCCTGAATTTACTACATTAGAATCTCCTTATAAAGAGATTATATTCTATGCTAAAGATATCTTAACTGTTAAACCTAAAACATCTTATGATATAGCAGTAGATAATGGATTCGAAGGAACAGAAGAGGAATGGGTTAAGTCCATTAAAGGGGAACAAGGTCCACAAGGACCTAAGGGTGATAAAGGTGAACCTGGTGAAAAAGGAGATAAAGGTGGAGATGGAATTGATGGTGAAATAGGTCCACAAGGTCCAACAGGTCCTATGGGACCAAAAGGGGATAAGGGTAACACTGGAGAAAAAGGTGAAAAAGGAAATGGTTCTGTCAATCAAACTAGACTACCTCAAATATTAAGAGAGCAATATTTTGAAAACTTAGAAACTCCAGTAGTCGATAGTGATAATGGAATTATAGAGCAAATCAATCCGCTCAATGCACAAACAGTAAATTACTACTTTATTGGTAATGTTTTGGATATTAATGAACCAGAAACAAAAACAACTGATTTTACACAGTTTCAACAAGGTATTGTAACAATGGATTGGACTGATAGTTCAGTCTCTTTATCTAATGATAAAATACAAACTTATATAAATACGACAAATACTGCTTTCGCTTTGTTACACATATATAACGGAAAACCTGTCTTAGACAAAGCCTATATCAGTCTGTCTATGCGAGAAAATTATATGAATGACCTAATCAAAACGTTTGTAAACAAAAACGATTTTGAAATCAAATTAGGAAAGGGTATTATTTTCGATATTTCAAGACGTTTCACCAACTTAGCAACATTAAAAGAAATTGTTGACGAGATTTCAGCTAACAAAGGAGATTATTTACAACTACATTTTTCTGATGACCAAGGTTATTCAATTCATTCAGAAATTTTAGGTCAGAATGGGACTACAAGTAATGATAAATATTTAACTAAAAAAGAAATTATGGAACTTATAGACTATGCCAATGGTAAAAATGTTATGATTGTTCCTGATTTTGATGTTCCAGGACATTCTCAAGGGTGGTTAGACTTATTGAAGGCAAAAAATCCCGATTTATATTCCAATGTAGTATCTGATTATGATACTGGTTTGGCTGATTATTATGGAAATGATATAGCTGCAAAATTTATAGAAGACCTTATTGAAGAAATTACAACTATGTTTTATCAACCTAAATATGGTGATAGATTAGTTTTCTCAATTGGTGCCGATGAAGTACCTGGTGTCAATGTTGCTCAAATTGATTATGTGAATTTTGTCAATAGAATGGCGAAAAAAGTTTATGAGAGAGGTTATTATCCTAGAATGTGGAATGACTGTCTTACAGACGATGGTATTAAAATGTTAAACGATAATATTGAGGTGTCTTATTGGCTACAAGGGCTATCTTCTGCCGAGAAATTTATTGAGGAAAATAAGATGGTAGTTAATAGTAATTTCTATTCTCAAGTTTATAGTCCGTCTTTAAATGGAAAAGCAGAGGGTGCCATTGATGAACAAATAGATTATATACGTTCTAATTTTGCTGAAAATAAGTTTTGTGAGAAAGAAAATCCATATACAATAGTTGATACTAAAGATAACTTAAAAGGTACAGCTTTTACTTTTTGGAATGAAGACGGTAATGAATTAACAGATGAAGAATTGTTAGAACAAGTTATACCAATTATAAAAGCATATTTTACACTTGTTTAA

Tertiary structure

PDB ID
1f6a117ce9bad064c112ae3a1ace3a329c11837ae6ac3fe569ed479bdc458c23
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7032
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Staphylococcus virus vB_SurM-PSU4 Kwon,H., Park,S.Y. and Kim,J.H. 2016-07-06 — GenBank