Protein

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UniProt accession
F8J173 [UniProt]
Protein name
Glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIDPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKALSAQLEVARIDDMNQTKSFVTSSVVDAKEDINRTVNARIAGARFIPKGFANADDLKKAYPKGQDGIFVVADTGHMWLFVNGAWKDCGVYQTPVQKNQTFTFQPSKDGFPNYDTATHKLDFRCITDSAQVTTPSGDAYRIPQYTVVDVNWEFTTGVIIFDTNTLSVISQSPYIPINANQYVLASYRRYPAEGDRLTWNGVLAQSLLINGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDQAYVSYQNRNYTLPHNATVALDFSRVTSFDILIDMKTGEVSTNDKYRLLTPNMDKVSFATVRLLNNGKVAIEGIKLLDEVSPKNSTGILPIAHRGLNSIAPEESLEAYSLAVRSGYKDIECDIYFTEDGIPVLHHDATINSIARNSDGTELTQPVKIGERMLVELNAYDYGIYKSEIFKGLNICTFEDIIKFARRTGATVHAELKQQYTDEQCQVLLDIVSKYRMANKVGWQAFDHSSLGYIASHDENAQLELLAGSITDDLIAEGKKRLNGKRKVVLSVGQGVTQRLVDQAHSEGFDVYVWTVDDIDGAKKLINMGVDGIMTNGHIDLPNLLSSDYDLQVSNSPAVDLVTNLTWYKNTYINGKGYIYNLLDGMKDGEERTFAPASGENWFSAIVNFKKNTYTLSFAAKSTVNTDNLTTLMRHVEMGDNNYNCVTSVNGTPVNSISWGDNDLKVSDSYTRYSVTYTANPDNKPFQIGFRTSSSTGTVSIKNIRLTVGTETSWGATVCMMSYLDANQGETYYARQLEEGAWLNAPMVVTNDNLDAIPSTVITDGENHTVKITIPSGGTKLFLNSNETLVPMVFKQSASSGI
Physico‐chemical
properties
protein length:877 AA
molecular weight: 97183,99720 Da
isoelectric point:5,06489
aromaticity:0,09122
hydropathy:-0,31368

Domains

Domains [InterPro]
IPR017946
367–620
IPR017946 G3DSA:2.60.120.260
PTHR46211
370–612
PTHR46211 IPR008979
IPR030395
375–620
IPR030395
IPR017946
376–611
IPR017946
cd08556
378–611
cd08556
IPR030395
380–611
IPR030395
PS50007
384–428
PS50007
F8J173
1 877
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage c5
[NCBI] 		2892341 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

Description Category Evidence (source)
GO:0008081 phosphoric diester hydrolase activity Molecular Function IEA:InterPro (UniProt)
GO:0006629 lipid metabolic process Biological Process IEA:InterPro (UniProt)

Tertiary structure

PDB ID
4ca4744e3a6f4f2feead334d510d28d28e6f1eee8e613d11c398b084f1529c94
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2641
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomes and comparative genomics of Lactobacillus delbrueckii phages. Riipinen KA, Forsman P, Alatossava T 2011-07 21465086 PubMed
The genomes and comparative genomics of Lactobacillus delbrueckii phages Katja-Anneli Riipinen, Päivi Forsman, Tapani Alatossava 2011-04-05 10.1007/s00705-011-0980-5 DOI