Protein

View in Explore
Genbank accession
DBA08229.1 [GenBank]
Protein name
Phage tail tip, host specificity protein J
RBP type
TF
Evidence RBPdetect
Probability 0,56
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence Phold
Probability 1,00
Protein sequence
MGADVQQHLTGRKGGSSKPKQPSIARDSLQSVATAKLLLAVGEGEFAETPTDRDIYLDNTPLMDASGNVNFPNVKWEWRSGSVDQDYIPGIPSVENETTVNVELRSDTPWVRSVTNTQLSAVRLRFAWPALQKQESSGDVNGYRIEYAVDVSTDGGAYQQVLLDAVDGKTTSRYERSQRIDLPAATTGWQVRVRRITPNQNSSLIADTMLIAGLTEVIDAKLRYPNTALLYIEFSAEQFSNIPAVTVECKARKVQVPTTYDPELRTYTGVWDGSFKSAWTNNPAWITYDISTNARFGLGKRIKPWMVDKWELYKIAQYCDQLVPDGKGGQEPRFLCDLNLQSRSQAWTLLRDIAAIYRGMSYWAQGQLVSQADMPRTADFDYVFTRANVIDGKMTYGAASARTRYSRALVSYDNPANNYDTDVTGYSDAPLLRRYGDNPVELSAIGCTRESEAQRRGKWAVLTSVQDRTITFATGMEGRIPLPGYIIPVADSLLAGREIGGRISAVAGRVVTLDRVTQAKAGDRLIINLPSGRAEGRTVQSVNGKAVTVTAAYSEAPEPELCWALDADDLAVQLYRVMSTKRDDNGQWTINGLQYEPSKFDHIDTGARLEERPISIIPVTTVQPPASVTLSSRWTIDQGLAVSTMTIIWPAVEGAVAYDVEWKKDSGNWIRLPRAGTTSVDVTGIYAGGYLARVRAVSAFDITSVWKSSILTQLSGKTGAPPALAFLRTTSGPWKIGLEWGFPASGAADTAYTEIQQSVTPGGSEQNATALGLFAYPTDTHTLTSLAAGARLAFRGRLIDRTGNVGPWSAWVDGISSTDASEYNELITKEYVESALGEQFFENIEQIGGNVDQLMEQYYDAGTVYQKGQIVRLNGRFYQALQDVPAGNPPPNPVYWADVGELVESVDALALRVTENAAAIEELDGVVQSSASSLDVLQAAARREPATGEKADALKGWDTIARAATEVIVRANEIEAQAKRVETVQAQTSANGAAIQTTQSVVASLDQGVKAMYSVKLQAHANGQEYATGFQLGFDSGTSVTTMAFQADRFLWFNSSSGQTVAPVSIVGGQMFINEALINRAFIRELIMGMRLQSQALDSQGRPLIDIDFVSGKLVVRSTGSNGSQEMTGDAIKTLDANGVVRVQTGNLDL
Physico‐chemical
properties
protein length:1150 AA
molecular weight: 125198,84140 Da
isoelectric point:5,04107
aromaticity:0,08261
hydropathy:-0,25678

Domains

Domains [InterPro]
IPR053171
6–940
IPR053171 IPR015406
IPR055385
94–220
IPR055385 IPR032876 G3DSA:2.10.10.20
DBA08229.1
1 1150
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeS-D14B
[NCBI] 		2965059 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA08229.1 [NCBI]
Genbank nucleotide accession
BK061476 [NCBI]
CDS location
range 1 -> 3453
strand -
CDS
ATGGGCGCCGACGTTCAGCAGCACCTCACCGGCCGCAAGGGCGGCAGCAGCAAGCCCAAGCAGCCGTCGATCGCCCGCGACAGCTTGCAGTCCGTGGCCACCGCCAAGCTGTTGCTGGCGGTGGGGGAGGGCGAGTTTGCTGAAACGCCCACTGACCGGGATATCTACCTGGACAACACCCCGCTGATGGACGCCAGCGGCAACGTCAACTTCCCCAACGTGAAGTGGGAATGGCGCAGCGGCAGTGTCGATCAAGACTACATCCCCGGCATCCCCTCGGTGGAGAACGAGACCACGGTGAACGTGGAGCTGCGCAGCGACACCCCGTGGGTGCGTTCGGTGACCAACACCCAGTTGTCCGCCGTGCGCCTGCGCTTCGCCTGGCCGGCCCTGCAGAAGCAGGAGAGCAGTGGGGACGTGAACGGCTACCGGATCGAGTATGCCGTAGACGTCAGCACCGACGGCGGCGCCTACCAGCAGGTGTTGCTGGATGCTGTCGACGGCAAGACCACCAGCCGCTATGAGCGGAGCCAGCGCATCGACCTGCCGGCGGCGACCACTGGCTGGCAGGTACGCGTGCGCCGGATCACGCCGAACCAGAACAGCAGCTTGATCGCCGACACCATGCTGATCGCCGGTCTGACTGAGGTGATCGACGCGAAGCTGCGCTACCCAAACACAGCTCTGCTCTACATCGAGTTCAGCGCAGAGCAGTTCAGCAACATTCCGGCCGTCACCGTCGAGTGCAAGGCCCGCAAGGTCCAAGTGCCGACCACCTACGACCCGGAGCTGCGCACGTACACCGGCGTCTGGGATGGCAGTTTCAAGAGCGCCTGGACCAACAATCCCGCGTGGATCACCTACGACATCAGCACCAACGCGCGCTTCGGCCTGGGCAAGCGGATCAAGCCCTGGATGGTGGACAAGTGGGAGCTCTACAAGATCGCCCAGTATTGCGACCAATTGGTGCCAGACGGGAAGGGCGGCCAGGAGCCGCGCTTTCTGTGTGATCTGAACCTGCAGTCGCGCTCCCAGGCATGGACACTGCTGCGGGATATCGCGGCGATCTATCGGGGGATGAGCTATTGGGCGCAGGGCCAGCTTGTGTCGCAGGCCGACATGCCGCGCACTGCCGACTTCGACTACGTGTTCACCCGGGCGAATGTGATTGACGGGAAGATGACCTACGGCGCCGCCTCGGCTCGCACCAGATATAGCCGCGCCCTGGTCAGCTACGACAACCCGGCGAACAACTACGACACCGACGTGACGGGCTATTCCGACGCGCCGTTGCTGCGTCGCTATGGCGACAACCCGGTTGAGCTGTCTGCCATCGGCTGTACGCGAGAGAGCGAGGCGCAGCGGCGCGGAAAGTGGGCGGTGCTGACCAGCGTGCAGGACCGCACCATCACCTTCGCCACCGGTATGGAAGGCCGGATTCCGCTGCCGGGCTACATCATCCCGGTGGCTGACTCTCTGCTGGCCGGCCGCGAGATTGGCGGCCGGATCTCGGCTGTTGCTGGCCGCGTGGTAACGCTCGATCGCGTCACTCAAGCCAAGGCCGGTGATCGCCTGATCATCAACCTGCCGAGCGGGCGCGCCGAGGGCCGGACGGTGCAGTCGGTCAACGGCAAGGCCGTCACCGTCACCGCGGCCTACTCGGAGGCGCCGGAGCCGGAACTGTGCTGGGCGCTCGACGCCGATGACCTGGCTGTCCAGCTCTATCGGGTGATGAGCACCAAGCGTGACGACAACGGCCAGTGGACCATCAACGGCCTGCAGTACGAGCCGAGCAAGTTCGACCACATCGATACCGGCGCACGGCTGGAGGAGCGCCCGATCAGCATCATCCCGGTCACCACCGTGCAGCCACCGGCCAGCGTCACGCTCTCGTCGCGCTGGACAATCGACCAGGGGCTGGCGGTGAGCACCATGACGATCATCTGGCCGGCAGTGGAGGGCGCCGTCGCCTACGACGTGGAATGGAAGAAGGACAGCGGCAACTGGATCCGCCTGCCGCGTGCCGGCACCACCAGCGTCGATGTGACCGGCATCTACGCAGGTGGATATCTGGCGCGAGTGCGTGCGGTGTCGGCCTTCGACATCACGTCGGTCTGGAAGAGTTCGATCCTGACCCAACTCAGCGGTAAGACCGGCGCGCCGCCGGCGTTGGCATTCCTGCGTACCACCAGCGGACCGTGGAAGATCGGCCTGGAGTGGGGATTCCCGGCCAGTGGCGCGGCGGACACCGCCTACACCGAGATCCAACAGTCGGTCACCCCGGGCGGCAGCGAACAGAACGCAACTGCCCTGGGCTTGTTCGCATACCCGACCGACACCCACACGCTGACCTCGCTGGCGGCCGGCGCTCGCCTGGCCTTCCGCGGGCGGCTGATCGACCGGACCGGCAACGTCGGCCCATGGTCGGCCTGGGTCGACGGCATCAGCTCGACGGATGCGAGCGAGTACAACGAACTGATCACCAAGGAGTACGTCGAGTCCGCACTGGGCGAGCAGTTCTTCGAAAATATCGAGCAGATCGGCGGTAACGTCGACCAGTTGATGGAGCAGTACTACGACGCCGGCACGGTATACCAGAAGGGCCAGATCGTTCGATTGAACGGCAGGTTCTATCAAGCCCTCCAGGACGTTCCCGCGGGCAATCCGCCGCCGAACCCCGTTTACTGGGCTGATGTGGGCGAGCTCGTCGAATCGGTCGATGCCCTTGCGTTACGCGTGACTGAGAATGCGGCCGCGATTGAAGAGCTCGACGGCGTTGTTCAGTCCAGTGCCTCCAGCCTGGACGTGCTGCAAGCTGCCGCGCGCCGGGAGCCGGCTACCGGCGAGAAAGCGGATGCGCTGAAGGGGTGGGACACCATTGCTCGAGCAGCCACCGAGGTCATCGTGCGCGCGAATGAGATCGAGGCGCAGGCGAAGCGTGTAGAGACCGTCCAGGCGCAAACGAGCGCCAACGGGGCCGCGATTCAGACCACACAGAGCGTTGTAGCGTCACTGGATCAGGGCGTGAAGGCGATGTACAGCGTGAAGCTCCAGGCCCATGCCAATGGGCAGGAGTACGCCACCGGGTTCCAGCTTGGGTTCGACAGCGGTACGAGCGTGACGACCATGGCGTTCCAGGCTGATAGGTTCCTCTGGTTCAACAGTTCCAGCGGGCAGACCGTGGCGCCGGTCTCGATCGTCGGCGGCCAGATGTTTATTAATGAAGCGTTAATAAACCGAGCCTTTATCCGCGAGTTGATTATGGGTATGCGCTTGCAATCACAAGCGCTTGATTCGCAAGGGCGCCCACTAATCGATATCGACTTCGTTTCCGGCAAGCTTGTTGTTCGGAGTACTGGGAGCAATGGTAGTCAAGAGATGACGGGGGATGCGATCAAGACTCTCGACGCTAACGGGGTTGTTCGCGTACAGACGGGGAATCTCGACCTATGA

Tertiary structure

PDB ID
c8e67e2b9e4f5b26369085ed7f00c3c71ba978d39bf2603543601675f3687464
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7982
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophage identification and molecular analysis in the genomes of 53 Pseudomonas aeruginosa strains isolated from critical care patients Gonzalez de Aledo,M., Blasco,L., Lopez,M., Ortiz-Cartagena,C., Bleriot,I., Pacios,O., Hernandez-Garcia,M., Canton,R. and Tomas,M. 2023 — GenBank