Protein

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Genbank accession
AYD79895.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,60
TF
Evidence Phold
Probability 1,00
Protein sequence
MGLVQVDPALIDPKGGTVNQVLAKVSETQVGFRDENKDDPSADLSNVSFDSQTGTLTIIFQDGTQKSVSGLPTADQMKAGKEGKQGKQGIQGNNGKDGKDGRDGEPGCPGIRGTRGRQGPTGNTGPIGPTGETGPVGPTGAIGPTGPAGRDAIINQYEVSPVLDPLTGNEIVGAFVGSDFDPNTGRTTNFGRAIAPASQSAINVAFNKPFLNRCASLTITFLNAATNQAKTYSIYNTDGTAVKENVLLGGFMLKSTGANTVGWDFYYSAIGD
Physico‐chemical
properties
protein length:272 AA
molecular weight: 28044,71090 Da
isoelectric point:4,99049
aromaticity:0,06250
hydropathy:-0,41691

Domains

Domains [InterPro]
PTHR24637
77–151
PTHR24637
IPR008160
98–151
IPR008160
AYD79895.1
1 272
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA11
[NCBI] 		2382310 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYD79895.1 [NCBI]
Genbank nucleotide accession
MH389777 [NCBI]
CDS location
range 56993 -> 57811
strand -
CDS
ATGGGATTGGTACAAGTAGATCCCGCTCTAATTGATCCGAAGGGCGGTACAGTCAATCAGGTTCTTGCGAAAGTTTCGGAAACTCAGGTTGGCTTTCGCGATGAAAACAAAGACGATCCTAGCGCAGATTTGTCGAACGTTTCTTTTGATAGTCAAACGGGAACGTTAACGATTATTTTTCAGGACGGCACGCAGAAATCTGTTTCTGGTTTACCTACTGCTGATCAGATGAAAGCAGGAAAGGAAGGGAAACAAGGTAAGCAAGGCATTCAGGGAAATAACGGCAAAGACGGCAAAGATGGTCGCGATGGTGAACCGGGTTGTCCGGGAATTCGCGGAACGAGAGGACGACAAGGGCCAACTGGAAACACTGGCCCGATTGGCCCAACGGGCGAAACTGGTCCGGTTGGTCCGACTGGTGCAATTGGCCCAACTGGTCCTGCTGGTCGTGATGCAATTATAAATCAATACGAAGTTTCTCCAGTTTTAGATCCGTTAACCGGAAATGAAATTGTTGGTGCGTTTGTTGGAAGTGATTTTGATCCTAACACTGGACGCACAACAAACTTCGGTCGTGCTATTGCTCCTGCGTCTCAAAGCGCTATCAACGTTGCATTCAACAAACCTTTCTTGAACCGTTGTGCATCACTAACAATTACGTTCTTGAATGCTGCAACGAATCAGGCAAAAACTTATTCCATCTACAACACTGATGGCACGGCAGTTAAAGAGAACGTTCTGCTTGGTGGCTTCATGCTCAAGTCCACTGGTGCGAATACTGTAGGTTGGGATTTCTACTATTCCGCAATAGGGGATTAA

Tertiary structure

PDB ID
af417137b2d89cd88dc793aea4fd58c5a97d93a5a32569daafde229e798c611a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7428
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo bacteriophages are represented within an increasing diversity of environmental viruses infecting the emerging phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank