Protein

View in Explore
Genbank accession
YP_010582168.1 [GenBank]
Protein name
putative tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,91
TF
Evidence Phold
Probability 1,00
Protein sequence
MSSGCGDVITLNDLQIAKKHQLFEAEVITGKAGGIAGGADIDYATNQVTLQTQKTLPAVLRDAGFTPAPFNFTTGGTLGVNDADKAVLWPIEDGGDGNYYAWRGSLPKVIPASSTPLTTGGISDAAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFTNNETVNFGGKVLTIDCKAKFIGDGNLVFTQLGNGSVIIGAFMESATTPWVIKPWTDDNQWITDPAAVVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKDQNISSVLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGD
Physico‐chemical
properties
protein length:336 AA
molecular weight: 35903,96450 Da
isoelectric point:4,63729
aromaticity:0,09226
hydropathy:-0,09524

Domains

Domains [InterPro]
G3DSA:2.10.10.80
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
93–132
IPR040775 IPR012332
IPR015331
138–336
IPR015331
YP_010582168.1
1 336
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage St162
[NCBI] 		2024312 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010582168.1 [NCBI]
Genbank nucleotide accession
NC_069146 [NCBI]
CDS location
range 40391 -> 41401
strand +
CDS
ATGTCAAGCGGTTGCGGCGATGTTATAACACTCAACGATTTGCAAATAGCTAAAAAGCATCAGCTTTTCGAAGCCGAAGTCATTACTGGTAAGGCTGGGGGCATTGCCGGTGGGGCGGACATTGACTATGCGACAAACCAAGTGACGTTACAGACGCAAAAGACGCTGCCAGCAGTCTTACGTGATGCCGGTTTTACCCCGGCACCTTTTAACTTCACAACCGGCGGGACCCTAGGGGTTAACGACGCGGATAAAGCGGTTCTTTGGCCTATAGAAGACGGCGGCGACGGCAACTATTACGCGTGGCGAGGCTCACTACCTAAAGTGATTCCCGCGTCGTCTACACCTCTCACTACTGGAGGAATTTCTGACGCAGCTTGGGTCGCCTTTGGAGACATCACATTTCGTGCGGAAGCAGATAAAAAATTTAAGTACTCGGTTAAGCTTTCTGACTTTACTACTTTACAGCAATTAGCCGATGCCGCTGTTGACAGCGTTCTTATCGACCGTGATTACACCTTTACCAATAACGAGACTGTTAACTTCGGAGGGAAAGTCTTAACCATTGACTGTAAAGCTAAGTTTATTGGTGATGGTAACTTGGTTTTCACACAATTGGGTAACGGTTCGGTAATAATCGGCGCTTTTATGGAGAGCGCTACGACCCCGTGGGTAATTAAGCCGTGGACTGACGATAATCAGTGGATAACAGACCCTGCCGCGGTAGTAGCAACGCTGAAACAATCAAAAACTGATGGCTATCAGCCAACAGTAAATGATTATGCTAAGTTCCCAGGCATAGAATCTCTCCTTCCACCTGAAGCTAAGGACCAAAATATTTCATCTGTCCTTGAAATACGGGAATGCACCGGCGTTGAGGTTCACCGGGCTAGCGGACTTATGGCGTGCTTCCTGTTTCGCGGCTGCCATTTCTGCAAGATGGTGGACGCCGATAACCCTAGTGGCGGTAAGGATGGGGTAATTACCTTCGAAAACTTGAGCGGGGACTGA

Tertiary structure

PDB ID
eac58cebbad1aba3ac50b3a88c99cffddbbfd648261a5f369310f78a54ec1d91
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7650
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank