Protein

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Genbank accession
AKO62165.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPPLKLQFSDSPAIQIFGYQTTMPYIDITTMRGMMPGVIASMLPDHSAVLAENCHFRYGVITPEHQMSEAEKTFAIKPKTIFHYRDDFWFAWTDVVDVIRSPIAQDPHGRIYYTDGRFPKVTDATIATKGDGNHPASSYRLGIPAPTTAPVCTVQQGGDVSDDNPNDDETRFYTETFVSDYGEEGPPGPASLEVTLRTPGTAVQLTLAPVPLQNANIKRRRIYRSASGGGEADFLLVAELDASVLSYTDKIPTKNLGPSLATWDYLPPPENMTGLCLMANGIAAGFAGNEVMFSEAYLPYAWPEVNRHTTAEDIVAICPLGTSLVVATKGEPYLFSGVSPSTISGSRIPSMQACLSRRSMVAMEGFVLYAGTNGLVSVDVNGNTALATEKIISPEQWQSQFNPTSIVAYSWRGDYIGCYTKPDGKQDVFVFSPANMDIRYLSTPFDCAWVDLAKDMMRVVTGDKMSVLAGGALPSTIRWHSKIFSLPERTSFSCIRVKSPAPERVGITVMADDVPVIHFAPGTFKGSVVRLPAATGQNWQVMVSGFGQVERITLSTSMSELPV
Physico‐chemical
properties
protein length:563 AA
molecular weight: 61327,12150 Da
isoelectric point:5,23751
aromaticity:0,09414
hydropathy:-0,09076

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Ss-VASD
[NCBI] 		1675531 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sonnei
[NCBI] 		624 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Shigella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AKO62165.1 [NCBI]
Genbank nucleotide accession
KR781488 [NCBI]
CDS location
range 45620 -> 47311
strand +
CDS
ATGCCGCCTTTAAAACTTCAATTCAGTGACTCACCTGCCATTCAAATTTTCGGATACCAGACAACCATGCCTTATATCGATATAACAACTATGCGCGGGATGATGCCAGGCGTTATTGCATCTATGCTGCCAGATCATTCTGCTGTACTGGCAGAAAACTGTCATTTTCGCTATGGAGTGATCACGCCTGAACACCAGATGTCAGAGGCTGAGAAAACATTCGCGATTAAGCCGAAAACCATTTTTCATTACCGTGACGATTTCTGGTTTGCATGGACGGATGTGGTGGATGTGATCCGCAGTCCGATCGCTCAGGACCCCCACGGGCGTATTTACTACACTGACGGGCGTTTTCCTAAAGTGACGGATGCAACCATTGCCACAAAAGGGGACGGGAATCATCCGGCATCATCGTATCGTCTGGGGATCCCCGCGCCGACGACAGCACCTGTCTGTACTGTTCAGCAGGGCGGTGATGTTTCTGACGATAACCCGAATGATGACGAAACCCGGTTTTATACGGAAACCTTTGTCTCAGATTATGGTGAAGAAGGTCCGCCAGGTCCGGCGTCTCTGGAGGTAACACTCCGTACTCCGGGGACTGCGGTACAACTGACGCTGGCTCCGGTGCCATTGCAGAATGCCAATATTAAACGTCGCCGGATTTATCGCTCTGCATCAGGTGGAGGAGAAGCGGATTTTTTACTTGTGGCTGAACTGGATGCGTCAGTGCTCAGTTACACGGACAAAATACCAACGAAAAACCTTGGGCCTTCCCTGGCAACATGGGATTACCTGCCGCCACCGGAGAATATGACGGGTCTTTGCCTGATGGCTAATGGTATTGCCGCCGGGTTTGCCGGTAATGAAGTGATGTTTTCGGAAGCGTATCTGCCGTATGCATGGCCGGAAGTGAATCGTCACACGACGGCAGAAGATATTGTGGCTATCTGTCCGCTGGGAACGTCACTGGTGGTGGCGACAAAGGGGGAGCCTTATCTGTTCAGTGGTGTATCGCCTTCCACAATTTCTGGCTCCAGAATTCCTTCCATGCAGGCATGCCTGAGCCGAAGAAGCATGGTGGCGATGGAGGGATTCGTACTGTATGCCGGGACAAACGGTCTGGTATCTGTTGATGTAAACGGTAATACAGCACTGGCAACGGAAAAGATTATTTCACCAGAACAGTGGCAGAGTCAGTTTAACCCGACGTCCATTGTGGCTTATTCCTGGCGTGGTGACTATATCGGTTGTTACACAAAACCGGATGGTAAGCAGGATGTGTTTGTATTCAGTCCGGCTAACATGGATATCCGTTATCTCAGCACGCCGTTTGACTGTGCATGGGTTGATCTTGCAAAAGATATGATGCGCGTGGTGACAGGAGACAAAATGTCAGTGCTTGCCGGGGGGGCTCTGCCCTCCACGATAAGGTGGCATTCAAAAATTTTTTCATTACCTGAAAGAACCTCTTTTTCCTGTATCAGGGTGAAATCTCCGGCACCTGAGCGGGTGGGGATCACCGTTATGGCTGATGATGTTCCTGTGATTCATTTTGCGCCGGGTACGTTTAAGGGAAGTGTGGTGAGACTTCCGGCAGCAACCGGGCAAAACTGGCAGGTGATGGTATCCGGATTCGGGCAGGTGGAACGAATAACCCTGAGTACATCAATGTCGGAGCTGCCGGTATGA

Tertiary structure

PDB ID
be37ae842304f298c3e545abfda26daf1ea40ccc7dc252b6ef282f9c9f8fc032
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9346
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel Shiga Toxin 1a Converting Bacteriophage of Shigella sonnei with Close Relationship to Shiga Toxin Expressing Escherichia coli Carter,C.C., Fierer,J., Chiu,W.W., Strain,M. and Mehta,S. 2015 — GenBank