Protein

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Genbank accession
AFH20266.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence RBPdetect
Probability 0,53
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MPGENMLYNTGTIAINGNTATGKGTNWTAPASQVRAGQTIIVMSNPVQLFQISSVNSATSMTVTPAASPALSGQKYAILVSDIISVDGLAQAMSQLIKEYDENIGAWETFATTSANQTITVTINGTTVTIPGIGKLAQKGSNGAVTVADGGTGATTAEGSRTNLGLGDSATRNVGTAAGTVAAGDDSRFEKIAKLGSAATKDTGEGEGNVLITGSFGVGSKILPVISDIWDKSQGSRFCNVTPATLGGPGIYGSGIRLSDRNIGSGATYAAQQSFFALIFSGKVIQFMGMTDGVDTGWMKIYHTGNTTRASDGTLKAASPIVRLFGNGKCQLNDESEGCTVTRLATGKYLVEGCEGLNSDAAWGGIDGGFDIPTDRNKQPLIWLDYEVNADGSVLIQTYHRTHPSAPAYARNERDGINDGEPIDIPSDQFVSVRVEMPANSIWNQKQKAIEEAAKSASEEVQ
Physico‐chemical
properties
protein length:462 AA
molecular weight: 48116,03250 Da
isoelectric point:4,90870
aromaticity:0,06277
hydropathy:-0,18939

Domains

Domains [InterPro]
IPR058008
306–439
IPR058008
AFH20266.1
1 462
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage HK140
[NCBI] 		1147143 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFH20266.1 [NCBI]
Genbank nucleotide accession
JQ086370 [NCBI]
CDS location
range 18644 -> 20032
strand +
CDS
TTGCCTGGAGAAAATATGCTTTATAACACCGGCACCATCGCCATTAATGGAAATACCGCCACCGGGAAGGGTACAAACTGGACGGCACCGGCCAGCCAGGTTCGCGCTGGCCAGACAATTATCGTGATGTCTAACCCGGTGCAACTGTTCCAGATTTCATCCGTGAACAGCGCCACGTCAATGACGGTTACGCCTGCCGCTTCCCCGGCGCTGAGCGGCCAGAAATACGCCATTCTGGTGTCAGACATTATCTCCGTGGACGGACTGGCCCAGGCAATGTCGCAGCTCATCAAAGAGTATGACGAGAACATTGGCGCGTGGGAGACGTTCGCCACTACCTCAGCAAACCAGACCATCACCGTTACCATCAACGGGACCACCGTAACCATCCCTGGCATCGGTAAACTGGCACAGAAAGGGAGCAACGGTGCGGTTACTGTCGCAGACGGCGGAACCGGGGCAACAACGGCAGAAGGGAGTCGCACAAACCTCGGTTTAGGAGACAGCGCCACAAGGAACGTCGGAACGGCTGCCGGAACTGTGGCGGCCGGGGATGATTCGCGATTCGAAAAGATTGCCAAATTAGGAAGTGCAGCAACAAAAGATACTGGTGAGGGTGAAGGAAATGTGCTGATAACGGGGTCATTTGGTGTGGGTTCTAAAATTTTACCAGTCATCAGCGATATTTGGGATAAAAGCCAAGGCTCGCGCTTCTGCAACGTTACCCCTGCGACATTGGGAGGTCCTGGTATTTACGGCTCAGGCATCCGGCTGTCTGATCGAAACATCGGAAGTGGAGCAACCTATGCCGCACAGCAATCCTTTTTTGCTCTGATTTTTAGCGGCAAAGTCATTCAATTTATGGGGATGACTGATGGCGTCGACACCGGGTGGATGAAGATTTACCACACAGGGAACACGACCAGGGCATCTGATGGCACGCTGAAGGCCGCCTCCCCGATTGTACGGTTGTTTGGGAATGGCAAATGCCAGCTTAACGACGAATCAGAGGGGTGCACTGTAACCCGCTTGGCTACGGGAAAATATCTGGTTGAAGGGTGTGAGGGGCTTAACTCTGATGCCGCCTGGGGCGGTATTGATGGCGGTTTCGACATCCCAACCGACCGCAACAAACAACCGCTCATCTGGCTGGACTACGAAGTAAACGCTGATGGTTCTGTGCTGATTCAAACCTACCACCGCACACATCCTTCGGCACCTGCTTATGCCAGAAATGAACGTGACGGGATCAATGACGGAGAGCCTATTGATATCCCGTCAGATCAGTTCGTCAGCGTTCGAGTAGAAATGCCTGCTAACAGCATCTGGAATCAGAAACAGAAAGCAATAGAAGAAGCTGCGAAAAGCGCGTCCGAAGAGGTTCAATAA

Tertiary structure

PDB ID
c3fbb2e23598fbba3a74aa57e89f34ac8171f96e8af5377b440ad314611c2128
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7492
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomes of several lambdoid coliphages Refardt,D., Gencoglu,M., Kunzli-Gontarczyk,M., Bruggmann,R. and Kropinski,A.M. 2012-04 — GenBank