Protein

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UniProt accession
A0A8S5M664 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MATTDIDLGVLAQGPKGDKGDKGDTGATGAQGIQGPQGKQGIQGPQGIQGPAGKPFSIKKTYATVALLNANGPNDLSEGDFAIIDSTVNDADNAKLFVWTGGKASLVTDMSGAQGVQGPQGKQGVQGTQGPQGVQGEQGATGATGMSGKSYKPYINESDGHWHLTVDDPNDVLTDPFAVTAVTSGTCDGLTTSGYYGVNSASVNGKPNGETGLLKVINAGGIITQTMHTVSDNLYIRNKHNGAWTSWRQTTQWS
Physico‐chemical
properties
protein length:254 AA
molecular weight: 26066,33200 Da
isoelectric point:5,24768
aromaticity:0,05906
hydropathy:-0,50118

Domains

Domains [InterPro]
IPR050149
13–150
IPR050149 cd19958
IPR008160
14–54
IPR008160 G3DSA:1.20.5.320
G3DSA:1.20.5.320
26–74
G3DSA:1.20.5.320 IPR008160
A0A8S5M664
1 254
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctDwe1
[NCBI] 		2826200 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD77583.1 [NCBI]
Genbank nucleotide accession
BK014827 [NCBI]
CDS location
range 35645 -> 36409
strand +
CDS
TTGGCAACAACTGATATCGACTTGGGCGTTTTAGCTCAAGGGCCGAAAGGTGATAAAGGCGATAAGGGGGATACCGGCGCTACTGGTGCACAGGGTATTCAAGGCCCACAGGGTAAGCAAGGCATTCAAGGCCCGCAAGGTATTCAAGGGCCGGCCGGCAAGCCTTTCAGCATTAAAAAGACCTATGCAACCGTAGCATTGCTTAACGCTAACGGGCCAAACGATTTGAGCGAAGGAGACTTTGCGATTATCGACTCAACCGTCAATGACGCAGATAACGCCAAGCTGTTTGTGTGGACGGGCGGTAAGGCATCACTGGTCACTGATATGTCTGGTGCACAAGGTGTGCAAGGCCCACAAGGCAAGCAGGGTGTGCAAGGCACACAAGGACCGCAAGGCGTACAAGGCGAGCAGGGCGCTACTGGTGCTACTGGCATGTCGGGCAAGAGCTATAAACCATATATCAACGAAAGCGATGGTCACTGGCATTTAACGGTTGATGATCCTAACGACGTTTTGACAGACCCGTTTGCGGTTACGGCGGTTACTTCTGGCACGTGCGATGGACTAACAACGTCTGGATACTATGGCGTCAATTCAGCGAGTGTTAACGGTAAGCCAAACGGCGAGACTGGCCTGCTCAAAGTCATTAACGCCGGTGGAATCATTACTCAGACCATGCACACGGTGTCGGACAATCTTTATATCCGCAATAAGCATAACGGCGCATGGACTTCATGGCGTCAGACGACTCAATGGAGTTAA

Gene Ontology

Description Category Evidence (source)
GO:0031012 extracellular matrix Cellular Component IEA:TreeGrafter (UniProt)
GO:0005615 extracellular space Cellular Component IEA:TreeGrafter (UniProt)

Tertiary structure

PDB ID
cda214fcad3d0f50a802c048c8996bc9cc6d860dae999cb66b7efab328d981e0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6878
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50