Protein

View in Explore
Genbank accession
YP_010647803.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,94
TF
Evidence Phold
Probability 1,00
Protein sequence
MQIWIHDRSMRRVCALNNEIPGMLPYSNSQWHPYLEYSTSTFDFTIPKIVNGKLHDDIKYINDQMYVSFYYDNSYHVFYVSQLVENDFNFQVTCNNTNLELAMEVARPLADSGGPKTIEWYLQNLDLLGFAGLEIGFNEIPDRTRTITFESQNGTKLEQLHSLMNQFDAEFVFRTDLNRDGTLKKFVIDIYQRPDENHHGIGKVRGDVTLYYQSGLKGVQVTSDKTQLFNAGYFVGKDGLTLGSVVFEEKNELGQVEFYSFKDSPMVYAPLSADKYPSALGGANEIDRWTRKDFQTEYADINSLKAYALRTIKQYAYPLMTYTVSVQSSFLENYNDINLGDTVKIINNNFIDGLVLEARVSEMVISFDMPQNNSVVFTNFRKLDNKPSSELQQRIDEIVSKSLPYHVEIRTTNGTAFKNGVGRSTVKPVLKQGDKIVDATYRFVIDGTIKYSGMTYDMVASDITEPTTLTVAAWVDDKEVASEEVTFFNVSDGTQGEPGPKGADGQTPYFHTAWSYSADGKDRFTTIYPNLNLLDGTKDFSGDWQWLENWTNDGTYKGLTVKKRTYLWQGIFKTFTAPKDGTYTFSAYIKNSGSKTNVYRFVYINGKEYWSDSTTKALGNNFDWLRDTFTIKLKANDTVIARYELSDEGTLWTAGHKWEEGSVATPWMPSTNEVKTSDYPKYIGQYTNYNQVDSPNPQDYTWSLIRGNDGEQGPQGPKGERGPQGPQGPQGPRGDQGIPGPKGADGKTQYIHIAYADTVSGSGFSQTDTNKAYIGMYQDFNAEDSNNPQDYRWSKWKGSDGKDGIPGKAGADGRTPYVHFAYADSADGQTGFSLTQTGRKRYLGVLTNFIKEDSTNPADYTWNDTAGSISVGGRNLLVKTNQGITNWDWTMSNGDKSVEEVNIDGIRAVKLTKGTKTANTGGNYIQYQGLLRKLIRPNTQYTLSFDVKPSVDVSFSATLIRGNYQAELTDTVLMNKALANQWTKVSCVLTSKETLSGDLNQVVYLAGMPTTNGNWLIIKNIKLEEGNIPTPWTPAIEDIQEEIDSKADDVLTQAQLNKLNEMNSIVKAELAAKASLDTLDQWKQAYQDFVNANNANRAQAEKDLADASARVTKLENDLNDMSERWNFIDSYMTASNEGLVVGKTDNSSSMLFSPNGRISMFSAGHEVMYISQGVIHIENGIFSKTIQIGRYREEQDIINPDRNVIRYVGGS
Physico‐chemical
properties
protein length:1211 AA
molecular weight: 135934,55270 Da
isoelectric point:5,09047
aromaticity:0,11313
hydropathy:-0,56763

Domains

Domains [InterPro]
IPR010572
141–382
IPR010572 IPR050149 G3DSA:2.60.120.260 Coil
IPR008983
569–659
IPR008983 IPR008160 IPR008979
IPR008983
574–645
IPR008983 G3DSA:1.20.5.320
YP_010647803.1
1 1211
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage SW11
[NCBI] 		2419630 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010647803.1 [NCBI]
Genbank nucleotide accession
NC_070715 [NCBI]
CDS location
range 15751 -> 19386
strand +
CDS
ATGCAGATTTGGATTCATGACAGAAGCATGCGCAGAGTGTGTGCATTGAATAATGAAATCCCCGGAATGTTACCTTATTCGAATAGTCAATGGCACCCTTACCTTGAATACTCAACAAGTACATTTGATTTCACAATTCCTAAAATCGTAAATGGTAAGTTACACGATGATATCAAATATATCAATGACCAGATGTACGTGTCATTTTACTACGACAATTCCTACCACGTTTTTTATGTTTCTCAACTCGTTGAAAATGATTTTAATTTTCAAGTGACTTGTAATAATACTAACCTTGAATTGGCAATGGAAGTTGCACGACCACTTGCAGACAGTGGCGGTCCCAAAACCATTGAGTGGTATCTTCAAAACCTTGATTTACTTGGTTTTGCTGGTCTTGAAATTGGTTTCAATGAGATTCCTGATAGAACAAGAACTATCACGTTTGAATCACAAAATGGCACTAAACTAGAACAGCTTCATAGCTTGATGAACCAGTTTGATGCTGAGTTTGTTTTTCGTACCGATTTAAACCGAGATGGCACTTTGAAAAAGTTTGTCATTGACATCTACCAACGTCCTGACGAAAACCATCACGGTATTGGAAAGGTTCGAGGAGATGTAACTCTCTACTACCAAAGCGGATTGAAAGGCGTTCAAGTCACTAGTGATAAGACACAACTGTTTAACGCTGGGTATTTCGTTGGAAAAGACGGACTAACGCTCGGAAGCGTTGTATTTGAGGAAAAGAATGAGTTAGGACAAGTAGAGTTTTATTCTTTTAAAGACAGTCCGATGGTTTACGCGCCTTTATCAGCAGATAAGTATCCATCTGCATTGGGTGGTGCTAACGAAATAGATAGATGGACACGCAAGGACTTTCAAACAGAGTATGCAGACATCAATTCCCTCAAGGCTTATGCCTTGCGTACTATTAAGCAATATGCTTATCCTCTAATGACATATACCGTAAGTGTTCAATCTAGTTTCTTGGAAAACTACAATGACATCAATCTAGGTGATACGGTTAAGATTATTAATAATAATTTTATAGATGGTCTAGTACTTGAAGCTCGAGTTTCTGAAATGGTTATCAGCTTCGATATGCCACAAAATAATTCGGTCGTTTTTACTAATTTCAGAAAGTTGGATAATAAACCGTCTAGCGAATTACAACAACGTATCGATGAGATTGTTTCTAAGTCACTGCCATATCATGTTGAGATAAGGACAACGAACGGTACAGCGTTTAAAAATGGTGTTGGTCGTTCTACTGTTAAGCCAGTTTTGAAACAAGGCGATAAAATTGTTGATGCAACCTATCGATTTGTGATCGACGGTACTATTAAATATTCTGGTATGACTTACGATATGGTAGCGTCGGATATTACAGAACCAACAACATTGACGGTTGCTGCTTGGGTTGATGATAAAGAAGTAGCTTCAGAAGAAGTTACTTTTTTTAATGTATCAGACGGTACTCAAGGCGAACCTGGTCCTAAAGGTGCTGACGGACAAACGCCATATTTCCATACAGCATGGTCTTACAGTGCAGATGGTAAGGATAGATTCACTACAATTTATCCTAATTTGAATTTGCTGGATGGTACAAAAGACTTTAGTGGGGATTGGCAATGGTTAGAAAATTGGACAAACGATGGAACATATAAAGGCTTAACTGTTAAGAAACGAACTTATCTATGGCAAGGTATATTCAAAACATTTACTGCTCCAAAAGATGGAACATATACTTTTTCAGCATACATTAAAAACTCAGGAAGTAAAACAAATGTATACAGATTTGTTTATATAAATGGGAAAGAATATTGGTCAGACAGTACTACTAAGGCTTTAGGAAATAATTTTGATTGGCTAAGAGATACCTTCACTATAAAATTAAAAGCCAACGATACTGTCATTGCCAGATATGAATTATCGGATGAAGGTACTCTATGGACTGCCGGTCATAAATGGGAAGAAGGTTCCGTAGCCACTCCTTGGATGCCTTCAACAAATGAAGTCAAAACTTCTGATTATCCAAAATATATTGGTCAGTACACAAACTATAACCAAGTAGATAGTCCTAATCCTCAAGATTATACATGGAGCTTAATTCGAGGAAATGATGGAGAGCAAGGACCACAAGGACCTAAAGGTGAACGTGGTCCTCAAGGACCACAAGGTCCACAAGGTCCAAGAGGTGACCAAGGAATACCTGGTCCTAAAGGAGCAGATGGGAAGACGCAGTATATCCATATCGCTTATGCTGATACTGTTTCAGGTAGTGGCTTTAGTCAAACAGATACTAATAAAGCCTATATTGGTATGTACCAAGACTTCAATGCCGAAGATAGCAACAATCCACAAGACTATCGTTGGTCTAAATGGAAAGGTAGCGATGGTAAAGATGGGATTCCTGGTAAGGCTGGGGCGGACGGAAGAACACCTTACGTCCACTTCGCTTACGCAGATAGCGCCGATGGTCAAACTGGGTTCAGTTTAACTCAGACAGGACGTAAGCGTTATCTAGGTGTACTTACGAACTTCATCAAAGAAGACAGCACAAATCCAGCAGATTATACATGGAATGATACTGCTGGAAGTATTTCGGTTGGCGGTCGGAACTTACTTGTAAAAACCAATCAAGGTATTACTAATTGGGATTGGACGATGTCGAATGGTGACAAGAGCGTTGAAGAAGTCAATATCGATGGTATTCGTGCTGTTAAATTAACCAAAGGTACAAAAACAGCAAATACTGGTGGGAACTACATTCAATATCAAGGTTTGTTGCGTAAACTCATACGACCAAACACACAGTACACTCTTTCGTTTGATGTAAAACCAAGTGTTGATGTAAGTTTTTCAGCAACGCTAATAAGAGGCAACTACCAAGCTGAATTGACTGATACTGTCCTTATGAATAAAGCTTTGGCAAATCAATGGACTAAAGTATCATGTGTTCTGACAAGTAAAGAAACGTTATCAGGTGATTTAAATCAAGTTGTCTACTTGGCAGGTATGCCAACAACAAACGGTAATTGGTTAATAATCAAGAATATCAAGCTAGAAGAAGGTAATATACCTACTCCATGGACACCAGCCATCGAGGACATACAAGAAGAGATTGATTCCAAAGCCGATGATGTCCTTACGCAAGCACAACTCAACAAGCTGAATGAAATGAATTCTATTGTTAAAGCTGAACTTGCTGCTAAAGCCTCACTTGATACACTTGACCAATGGAAGCAAGCCTATCAAGATTTCGTTAACGCAAACAATGCCAATCGTGCACAAGCTGAAAAAGATTTAGCTGATGCAAGTGCTCGTGTAACCAAACTAGAAAACGACTTAAATGATATGTCAGAACGTTGGAATTTCATCGATAGCTACATGACTGCATCAAACGAGGGTCTTGTTGTTGGTAAAACTGATAATTCTAGCTCTATGCTGTTTAGTCCAAACGGTCGTATCTCAATGTTCTCAGCTGGACATGAGGTAATGTATATCTCACAAGGTGTCATTCACATCGAGAATGGTATTTTCTCGAAAACTATTCAAATTGGACGTTATCGTGAAGAACAAGATATTATTAACCCTGACAGAAATGTCATTCGTTATGTAGGAGGTAGTTAA

Tertiary structure

PDB ID
3813c21e52b7d580c565f10595dca56331004a8c4b8c354579bdd31b80ea9ca0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7298
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations Lavelle,K., Martinez,I., Neve,H., Lugli,G., Franz,C., Ventura,M., Bello,F., Sinderen,D. and Mahony,J. 2018 — GenBank