Protein

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Genbank accession
AFM54326.1 [GenBank]
Protein name
putative structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGKDFKNADYIDYLPINMLATPKEVLNSSGYLRSFPGIAKRNDVNGVSRGVEYNTAQNAVYRVLGSKLYKGETVVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPADSDYTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTAGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTADELATGVMEALRFDSHELLIIHLPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRAIDFMYEGNQIACGDKSEAVTGQLQFDISSQYDKQQEHLLFTPLFKADNARCFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE
Physico‐chemical
properties
protein length:461 AA
molecular weight: 51125,85000 Da
isoelectric point:5,76213
aromaticity:0,10846
hydropathy:-0,27570

Domains

Domains [InterPro]
IPR021098
1–461
IPR021098
AFM54326.1
1 461
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SemP_Emek
[NCBI] 		1168548 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella
[NCBI] 		590 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFM54326.1 [NCBI]
Genbank nucleotide accession
JQ806763 [NCBI]
CDS location
range 7438 -> 8823
strand +
CDS
ATGGGTAAAGACTTCAAGAATGCCGACTATATTGATTACCTACCAATCAATATGTTGGCTACACCGAAAGAAGTCCTCAACTCATCGGGTTATTTACGCTCATTCCCCGGCATAGCGAAGCGCAACGATGTAAATGGTGTATCGCGTGGTGTTGAATACAATACCGCGCAGAACGCTGTATATCGCGTTTTAGGCAGCAAGCTCTACAAAGGGGAAACCGTAGTAGGTGATGTTGCCGGAAGCGGTCGCGTATCTATGGCACATGGTCGCACATCACAGGCGGTAGGCGTTAATGGTCAACTGGTCGAGTATCGCTATGATGGCACCGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGATTACACGCAGTATGAGTTAGGTTCAGTACGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCAAAAGACGGCACTGATTCATGGTTTATCACTGACCTTGAAGACGAATCGCACCCTGACCGATACAGCGCACAATATCGTGCCGAGTCGCAGCCTGACGGCATCATCGGCATCGGCACATGGCGAGACTTCATTGTCTGCTTTGGTTCATCGACGATTGAATATTTTTCCCTGACTGGTGCAACCACCGCTGGCGCTGCGTTGTATGTCGCACAGCCATCGTTGATGGTACAGAAGGGCATTGCCGGAACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCCGGCTACTGGCGCACCTTCCGTCTACATCATCGGGTCAGGGCAGGCTTCACCAATTGCGACGGCCAGTATTGAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGATGGAAGCGTTGAGGTTCGATTCGCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGCTGGTTTACGATGCCTCATCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACAGGTTTATACGACGATGTTTATCGTGCCATCGATTTCATGTACGAAGGAAACCAGATTGCGTGTGGCGACAAGTCAGAAGCGGTGACAGGGCAGTTGCAATTCGACATTAGTAGCCAGTACGACAAGCAGCAAGAACACCTGTTGTTTACACCCCTATTCAAAGCGGACAATGCCAGATGCTTCGACCTCGAAGTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCTGCAACCACAGACGGAATCAATTACGGTCGCGAACAGATGATTGAGCAGAATGAGCCGTTTGTGTACGACAAGAGAGTTTTATGGAAGCGTGTAGGTCGTATTCGTCGATTAATCGGATTCAAACTGCGGGTAATCACCAAATCACCTGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA

Tertiary structure

PDB ID
2593d5c68cd543c56c06eb2f524cc55db618af7753a90ecb867ac0f1caea2ddc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8619
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of two new Salmonella bacteriophages: vB_SosS_Oslo and vB_SemP_Emek Ho,N., Lingohr,E.J., Villegas,A., Cole,L. and Kropinski,A.M. 2012 — GenBank