Protein

View in Explore
Genbank accession
ADO19513.1 [GenBank]
Protein name
short tail fibers
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MTTTNTLKHISDKSEYKTFDPVGTSFPPSVTNVQEALGALAPIAIDGFIPESTVAVPGIIRLATEQEVIDGIGNNTAVTPETLKARLNIPTQATETVVGITRYATDVEAIDGTVTDAAIVPSSLKASIDNTFNTRTSTEDRNGVIKISTQAAALAGTDDTTAMTPLKVSLAIGAATAALPTYSTATTTVQGIVKIATPAEVQAGAMNNGVAVSPLGLISLTANASRRGLVQLASSAEAITGTDATKAITPQALQAKTGNTGRLGIVKLTTTVGSGDGNTALAYNANVISTTGGTITGTLNVNGTLRRNGQDVVTRNEIKDDVPIGTIIMWGGQTGNIPSGWEICDGGNVGDAGFRNVVGSKWGATGNKPDFRGLFPRGSNSSNDGAMKEWETNINIRNAKGNDSKQKPKLGQGVGSYGHGTVQAQQLRFHKHAGGFGEFSDDGSFGNSIRSNFVGTSKKIDWDNRSYYTNEGYEIDGNNRTPKSTLNSEGLIGNESRPWSMSILFIIKVR
Physico‐chemical
properties
protein length:510 AA
molecular weight: 53254,74670 Da
isoelectric point:6,47950
aromaticity:0,05294
hydropathy:-0,25882

Domains

Domains [InterPro]
SSF69349
249–334
SSF69349 IPR044916
G3DSA:2.10.280.10
249–286
G3DSA:2.10.280.10 IPR037053 IPR027448
IPR015173
253–310
IPR015173 SSF88874
ADO19513.1
1 510
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SP18
[NCBI] 		645664 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sonnei
[NCBI] 		624 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Shigella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADO19513.1 [NCBI]
Genbank nucleotide accession
GQ981382 [NCBI]
CDS location
range 88801 -> 90333
strand +
CDS
ATGACAACGACTAACACGCTAAAACATATTAGCGATAAATCCGAATATAAAACATTTGACCCGGTGGGAACTTCATTTCCTCCGTCGGTAACAAATGTTCAGGAAGCATTGGGAGCTTTGGCTCCTATTGCTATTGATGGATTTATCCCAGAATCTACGGTTGCAGTACCAGGTATTATTCGCCTGGCGACCGAACAAGAAGTTATTGATGGCATAGGCAATAACACTGCGGTAACCCCCGAAACTCTTAAAGCTCGTTTGAATATTCCAACTCAGGCCACAGAGACTGTTGTCGGAATTACCCGTTACGCAACCGATGTAGAAGCTATTGATGGCACAGTAACCGATGCAGCTATTGTCCCATCAAGTCTTAAAGCTTCTATTGATAATACATTTAATACCCGCACTTCTACAGAAGACCGTAATGGTGTAATTAAGATTTCGACTCAAGCCGCTGCTCTGGCAGGAACAGATGATACAACGGCAATGACTCCTTTGAAGGTTTCATTGGCCATCGGTGCAGCAACTGCAGCTCTTCCAACTTATAGCACAGCAACAACCACTGTACAGGGGATTGTTAAAATTGCAACCCCAGCCGAGGTTCAAGCCGGTGCAATGAATAACGGTGTGGCAGTTTCTCCACTTGGACTTATTTCATTGACTGCAAATGCCTCTCGCAGAGGGTTGGTCCAATTGGCTTCCAGTGCTGAAGCAATTACAGGTACGGATGCAACAAAAGCAATTACCCCACAAGCTCTTCAGGCAAAAACTGGTAATACCGGACGACTTGGTATTGTCAAACTGACAACTACCGTTGGTTCAGGGGATGGTAACACTGCTCTTGCATATAATGCAAACGTAATTTCAACCACTGGTGGTACAATTACTGGAACTCTTAACGTCAACGGAACTTTACGTAGAAATGGCCAGGACGTTGTAACCCGCAATGAAATTAAAGATGATGTTCCAATCGGAACTATTATTATGTGGGGTGGACAGACAGGAAATATTCCTTCTGGTTGGGAAATTTGTGACGGTGGTAATGTCGGTGATGCTGGTTTCCGAAATGTCGTTGGTAGTAAATGGGGCGCAACTGGTAATAAGCCAGATTTTCGTGGATTATTCCCTCGCGGTTCCAATAGCTCTAACGATGGCGCTATGAAGGAATGGGAAACAAACATTAATATAAGAAACGCCAAGGGAAATGATTCCAAACAAAAACCTAAATTGGGTCAAGGTGTTGGTTCATATGGCCATGGTACAGTGCAGGCACAACAACTCCGTTTCCACAAGCACGCAGGTGGGTTTGGTGAATTTTCTGATGACGGCTCTTTTGGTAATAGCATACGTTCTAATTTTGTAGGGACTAGCAAAAAAATAGACTGGGATAACCGCTCATATTATACCAACGAGGGATATGAAATAGATGGTAATAATCGCACCCCTAAAAGTACATTAAACAGCGAAGGTCTGATAGGTAATGAAAGCCGCCCATGGTCCATGTCCATTCTTTTTATTATTAAGGTCAGATAA

Tertiary structure

PDB ID
61559c3a3fa7c0d3a8bb797f976c6d25926c6ca2125bf8f4d87b5bf9a73215bb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6796
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phenotypic characterization and genomic analysis of the Shigella sonnei bacteriophage SP18 Kim,K.H., Chang,H.W., Nam,Y.D., Roh,S.W. and Bae,J.W. 2010 20437154 GenBank