Protein

View in Explore
Genbank accession
YAF83068.1 [GenBank]
Protein name
central tail fiber J
RBP type
TSP
Evidence RBPdetect
Probability 0,69
TF
Evidence Phold
Probability 1,00
Protein sequence
MPPAIIAGAIAIGASAAAYAGYITITTALIISMTATVAGAMLTKVSVPSLGAYTSQQDRKQVLRSSAAPKNYIYGKTKMSGVMFFAEEQAGDQADKEWLHIAIAVCAHEVNAILAVYLGDDDISTYGEYAQYQVHNNSTDVSDMLSRAPSWKPDMIGQGICWVRLSLKFNQEKFPSGLPNITFLVEGKKVYDPRSGLTQYSNNAALCILDYYRDYLKVPDSELLMEEFIEAANLCDETINGNSYSEPRYTINGVFDASEAVSSTLDDLHLCCAGEPTYIGGKHGLLVGAYYGPATMVLDESQIVGDIKIVPETPWNERINIVQGTFIDPDQGYTEVDYPAVKVDAYIIEDGAEFTTDQKYRFVTSEFQAQRLAQIAINRKRLGRTMDISLNFAGYPYRPGRYVKINIPQLGIAMEEFRVTKWALNPNGTGIKITVRQENSDVWGDAVGKPIDRPDLTNLPGPNVPAPTNIQFVPVASNAEVNYQGELSWVNPTIVDFTQIIIQGNGKTIVSQQSTGNKIQVNGLDRGITYTAYLRNSAKGGILSNVATLQFVLAIDSKYYGDIYANNGYFKGTVYANNIVGDVYNKMSGGIPYVNVSDDYGSGFPWASSAGEHVIWSIPGEEFDRTMDSNLYLTLSSSERQYFTVLMRAPGLPDQQVAYIDTGNDGSNSPAVVQLNGVTVPATDRDTPCQLICVVGTNRSSGASFYTPLAVQTLKENSSGAKDLVGRTVREVPWVALYKKGRTPIIPV
Physico‐chemical
properties
protein length:748 AA
molecular weight: 81692,21250 Da
isoelectric point:4,92961
aromaticity:0,09759
hydropathy:-0,15949

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_SmaS_12
[NCBI] 		3459932 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF83068.1 [NCBI]
Genbank nucleotide accession
PX000101.1 [NCBI]
CDS location
range 15172 -> 17418
strand +
CDS
ATGCCACCAGCAATAATTGCCGGAGCGATTGCAATCGGTGCCTCAGCGGCTGCCTATGCCGGATATATCACAATAACAACCGCCCTTATTATTTCAATGACGGCAACGGTTGCGGGTGCTATGCTAACGAAAGTTTCTGTACCTTCGTTAGGGGCATATACCTCACAACAGGACCGAAAACAAGTCTTGCGATCTTCAGCAGCACCAAAGAACTATATTTACGGTAAGACTAAAATGTCTGGCGTAATGTTCTTTGCTGAAGAACAGGCTGGCGATCAAGCTGATAAAGAATGGCTCCATATTGCCATTGCTGTTTGTGCTCATGAAGTAAATGCCATATTAGCTGTTTACTTAGGTGATGACGATATCAGCACCTATGGCGAATATGCGCAATACCAAGTCCATAACAACTCAACTGATGTGTCGGATATGCTTTCCCGAGCACCGTCATGGAAGCCTGACATGATTGGTCAAGGCATCTGCTGGGTACGCTTATCTCTCAAGTTTAATCAGGAGAAATTCCCTTCTGGTTTGCCGAATATTACTTTCCTTGTTGAAGGTAAGAAAGTTTACGACCCACGATCAGGTCTAACCCAATATTCCAATAATGCTGCTTTATGTATCCTCGATTATTATCGCGATTATCTGAAAGTACCAGATTCAGAATTGTTGATGGAAGAATTTATCGAAGCTGCTAACCTTTGCGACGAAACTATCAACGGCAACTCCTATTCGGAACCTCGTTATACAATCAATGGGGTTTTCGATGCGTCGGAGGCTGTTTCGTCGACGTTGGACGATCTCCATTTATGCTGTGCAGGCGAACCGACTTACATTGGTGGGAAACATGGTCTGTTAGTTGGCGCCTATTACGGCCCTGCTACTATGGTGCTGGACGAAAGTCAGATTGTTGGGGATATAAAGATCGTTCCTGAGACTCCATGGAACGAACGTATTAACATCGTACAAGGCACTTTCATCGATCCTGATCAAGGTTATACAGAGGTTGACTACCCCGCTGTAAAAGTCGATGCCTACATTATTGAAGACGGCGCTGAGTTCACTACTGATCAGAAATACCGTTTTGTTACTTCAGAGTTTCAAGCCCAGCGGCTGGCCCAGATAGCGATAAACCGCAAGCGCCTGGGGCGCACTATGGATATATCGTTAAACTTTGCGGGATACCCTTATCGCCCGGGGCGGTATGTTAAAATCAACATTCCACAGCTCGGTATTGCTATGGAGGAATTCCGCGTTACTAAATGGGCGCTGAATCCTAACGGTACGGGTATTAAGATTACTGTTCGCCAAGAAAACTCTGACGTCTGGGGTGATGCTGTTGGTAAACCCATTGACCGACCAGATCTGACAAACTTACCAGGCCCGAACGTGCCAGCACCAACGAACATTCAATTCGTTCCTGTAGCTTCAAATGCTGAGGTTAATTATCAGGGTGAGTTGTCGTGGGTTAACCCTACCATTGTTGACTTTACGCAGATTATTATTCAGGGAAACGGTAAGACAATTGTTAGCCAGCAATCGACAGGTAATAAAATTCAAGTCAATGGATTAGACCGCGGAATTACCTACACAGCATATTTGCGTAACTCTGCTAAGGGCGGAATCCTGAGTAATGTGGCCACATTACAATTCGTCTTGGCTATTGACTCGAAGTATTATGGTGACATTTACGCAAATAATGGTTATTTTAAAGGGACTGTTTATGCGAACAATATAGTTGGCGACGTCTATAATAAGATGTCCGGTGGGATCCCATATGTGAACGTATCAGACGACTACGGTAGCGGATTCCCGTGGGCATCGAGCGCGGGTGAGCATGTGATCTGGTCTATACCGGGAGAAGAGTTCGATAGAACAATGGACTCTAACCTATATCTGACGCTGTCGTCATCGGAGAGACAATATTTTACAGTTCTCATGAGGGCGCCAGGTTTGCCAGATCAACAAGTGGCGTATATCGACACAGGAAACGACGGGTCGAACTCCCCTGCAGTAGTACAGCTTAATGGGGTGACTGTCCCAGCAACTGATAGAGATACGCCTTGCCAACTAATATGTGTGGTGGGGACGAACAGGTCATCAGGGGCGTCGTTCTATACGCCGTTGGCAGTGCAAACATTGAAAGAGAACTCTTCCGGCGCTAAAGATTTAGTTGGTCGCACAGTGCGCGAGGTCCCTTGGGTGGCTCTGTATAAAAAAGGCAGAACGCCTATTATTCCAGTTTAA

Tertiary structure

PDB ID
73012767471d4458344fb1b61f228bf71b308913dce8c2f64f418e6baab93203
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8152
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of novel bacteriophages infecting clinical isolates of Serratia spp. and therapeutic efficacy in a Galleria mellonella model of infection Negus,D., Horton,M. and Hoyles,L. 2013-01-15 — GenBank