Protein

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Genbank accession
QIG65904.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSDITKVFNYPIPNTTLGAAWPNEVIDNIDPTPLFDIYVDSVDGSDSNDGLTEATALKTISAITWENNIKVGVKYGSYFREQIIVDTYTGIEIDVYGNPEDKLPTFDAADVFDGVWTNDTGNIWYADITTIDSQYTMYNSLWKNGVRMEWVSNTGNLTTNDHYFVAEASTNPTYLARFYIYSDIDPNTNNALYEYASRHYGVNLGDNCKISRIRTKRQLHNNGSTIIGNGSQANFCIFEDGVKHNSYIGRNATAFECIAYKHDLPRRTNATLFVGHTQDGIGQKVSFYNCLAIAEADKSQWAYDNNVGVTGFYAHTSGASAKWDEIDIFDCTVANCNLGISVADVVSLTSGRNWIHDCYGAISAVSDKIIAQDTKITDETHSIVRGLYLENSEDAIIQRLRIYVKHPTNHAMIYDVSDGGKCIVQNSALLLDKNAPNGFNYFLRMLDSGRGIQLQNNIFYAYDRDCAGIRTPNSAANMWTPENYWGGTDNYDYDIGGVWKGNYPAALAEPSYGYLFNDNICVDYGPSCITDMANGDFTTVAGSDAANLNAGIGTTDDVVYKPIPTYAEIDAM
Physico‐chemical
properties
protein length:572 AA
molecular weight: 63381,30030 Da
isoelectric point:4,50906
aromaticity:0,11888
hydropathy:-0,32325

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Ochrobactrum phage vB_OspM_OC
[NCBI] 		2712956 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG65904.1 [NCBI]
Genbank nucleotide accession
MT028491 [NCBI]
CDS location
range 146559 -> 148277
strand -
CDS
ATGAGTGATATCACAAAGGTTTTTAATTACCCAATCCCAAACACAACATTAGGTGCTGCATGGCCTAATGAAGTCATTGACAATATCGATCCTACACCACTCTTTGACATTTATGTCGATAGTGTTGATGGTAGTGATTCTAATGATGGTTTGACAGAAGCAACAGCTTTGAAAACTATTTCGGCTATCACTTGGGAAAATAACATAAAGGTTGGTGTAAAATATGGTTCGTATTTCCGCGAACAGATTATAGTTGATACCTATACAGGTATTGAAATTGATGTTTATGGAAACCCGGAAGATAAATTGCCTACCTTTGATGCGGCTGATGTCTTTGATGGAGTTTGGACAAATGATACCGGAAACATTTGGTATGCAGATATAACGACTATTGACAGTCAATACACCATGTATAATTCCCTTTGGAAGAATGGTGTTCGTATGGAATGGGTATCAAATACCGGTAATCTGACAACAAATGATCATTATTTTGTAGCAGAAGCTTCGACAAACCCAACATATCTTGCTCGATTCTATATCTATTCTGATATCGATCCAAACACGAATAATGCATTGTATGAATATGCAAGTCGTCATTATGGTGTTAATCTTGGTGATAATTGTAAAATTTCTCGTATTCGTACTAAGAGACAACTTCATAACAATGGCTCAACCATCATTGGCAATGGTTCTCAAGCTAATTTCTGCATTTTTGAGGATGGTGTAAAGCACAACTCTTACATTGGAAGAAATGCCACTGCATTTGAATGTATTGCCTATAAACACGATCTTCCAAGACGTACCAATGCAACATTATTTGTTGGACATACGCAAGATGGTATAGGTCAAAAGGTATCGTTCTACAATTGCTTGGCAATTGCCGAAGCTGATAAATCCCAATGGGCATACGATAATAACGTAGGTGTTACAGGTTTTTATGCTCATACAAGTGGTGCCTCGGCCAAGTGGGATGAAATTGATATTTTTGATTGTACGGTTGCTAACTGTAATTTAGGAATATCCGTTGCAGATGTTGTTTCCCTGACTTCTGGTCGAAACTGGATACACGATTGTTATGGCGCTATCAGTGCCGTGTCTGATAAAATTATTGCACAAGATACAAAAATTACTGATGAAACCCACTCAATAGTTAGGGGTTTGTATCTAGAAAATTCAGAAGATGCGATTATTCAACGACTAAGAATATACGTTAAACATCCTACAAACCATGCGATGATTTATGATGTATCTGATGGCGGGAAATGTATAGTTCAAAATAGTGCTTTGCTTTTGGACAAAAATGCTCCAAACGGATTTAACTATTTCTTGAGAATGCTTGATTCTGGTCGTGGTATTCAACTTCAAAACAATATTTTCTATGCTTATGATAGAGATTGTGCCGGTATTCGTACACCAAATTCAGCCGCTAATATGTGGACTCCTGAAAACTATTGGGGTGGTACTGACAATTACGATTATGATATTGGTGGAGTTTGGAAAGGCAACTATCCAGCCGCTTTAGCAGAACCTTCATACGGTTATCTATTTAATGATAACATTTGTGTCGATTATGGTCCATCATGTATTACAGATATGGCCAATGGAGATTTTACAACGGTAGCCGGTTCCGATGCTGCAAATTTGAATGCCGGTATCGGAACAACAGATGATGTAGTTTATAAACCCATACCAACATATGCTGAAATTGATGCAATGTAA

Tertiary structure

PDB ID
15d6ec82bad8a578ec04bd5b4ada7ce581de6e0f46b0e56a3cc00f17dc6ab591
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7683
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification and Characterization of First Virulent Phages, Including a Novel Jumbo Virus, Infecting Ochrobactrum spp. Decewicz,P., Golec,P., Szymczak,M., Radlinska,M. and Dziewit,L. 2020-03-18 — GenBank