Protein

View in Explore
Genbank accession
ARV77521.1 [GenBank]
Protein name
putative host-binding tail fiber
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,69
Protein sequence
MADTFTANFNLTKPEVGSSTDTWGAKLNTDLDTIDSEIAEAQAAPASAKTSLVDADQVHIYDSAASNVRKKITWANFKAALGNLAVLDTINNSLWSGTALSVANGGTGGTTQATARTGLGLAAIAASGSASDLTTGTLPNARVSGAYDGITTLAQTGLHTITTDAEAIRLVGSATGDPYFTFYKGAARQAYIQHTDGTGVNQGLRFVNDIATGGDTALTLKNSGGVDSLEFQVNGLEYVVYHSGNLAAADLNAIYGYTPANGGNSIVAGNGMTGGGTYGASRTLTLGTPSDITNSTGNTLTSTSHTHALGFIAAEVYTGSSTTETNYPLGTVLFVALGGTRPDVNSTTTVRQSGATGFVIEGTSTALLGTWRHRGGFTASGDRFGVYQRVA
Physico‐chemical
properties
protein length:391 AA
molecular weight: 39912,29870 Da
isoelectric point:5,16885
aromaticity:0,07417
hydropathy:-0,08056

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage phiM5
[NCBI] 		2005789 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARV77521.1 [NCBI]
Genbank nucleotide accession
MF074189 [NCBI]
CDS location
range 10942 -> 12117
strand +
CDS
ATGGCTGACACTTTCACCGCGAATTTCAACCTGACGAAGCCGGAGGTTGGCAGCTCGACGGATACGTGGGGTGCCAAGCTCAACACCGACCTCGACACGATTGACAGCGAAATCGCCGAGGCGCAGGCCGCCCCGGCGTCCGCTAAGACGTCGCTCGTCGACGCCGACCAGGTCCATATTTATGACAGCGCCGCCTCGAACGTGCGCAAGAAAATCACTTGGGCGAACTTCAAGGCCGCGCTCGGCAATCTCGCCGTGCTCGATACCATCAACAACTCGCTCTGGTCCGGCACCGCGCTTTCGGTCGCCAACGGCGGCACCGGCGGCACCACGCAGGCCACGGCGCGCACGGGCCTCGGCCTTGCCGCCATCGCCGCATCCGGCTCGGCGTCCGACCTGACGACCGGCACACTGCCGAATGCGCGCGTCTCTGGCGCCTACGACGGCATCACCACGCTCGCGCAGACCGGCCTGCATACGATCACCACCGACGCCGAAGCCATTCGCCTCGTCGGCTCCGCCACGGGTGACCCCTACTTCACCTTCTACAAGGGTGCGGCGCGGCAAGCCTATATCCAGCATACCGACGGCACCGGGGTCAATCAGGGTCTCCGTTTTGTCAATGACATCGCCACCGGCGGTGACACAGCCCTCACCCTGAAGAACTCGGGCGGCGTTGACAGCCTTGAGTTCCAAGTCAACGGCCTCGAATACGTCGTCTACCACTCCGGCAATCTTGCCGCCGCCGACCTGAACGCGATCTATGGCTACACGCCGGCGAACGGCGGCAACAGCATTGTCGCGGGGAACGGCATGACAGGCGGCGGCACCTACGGTGCCTCTCGCACGCTGACGCTCGGCACGCCGTCAGACATCACCAACTCGACCGGCAACACGCTCACCTCGACGAGCCATACGCACGCGCTCGGCTTCATTGCCGCGGAAGTCTACACCGGATCGAGCACCACCGAAACCAATTATCCGCTCGGAACCGTTCTCTTCGTCGCCCTTGGCGGCACCCGCCCCGATGTCAACAGCACAACGACCGTGCGGCAATCAGGGGCGACAGGGTTTGTGATCGAGGGAACCAGCACGGCATTGCTCGGCACATGGCGCCACCGCGGCGGCTTCACTGCGAGCGGCGACCGCTTCGGCGTTTACCAGAGGGTAGCATAA

Tertiary structure

PDB ID
082327a950724aaccf3edd309c47307ec882a6e5c71cf4216a48ca4dbb006e17
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7131
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Structure, proteome and genome of Sinorhizobium meliloti phage phiM5: a virus with LUZ24-like morphology and a highly mosaic genome Johnson,M.C., Sena-Velez,M., Washburn,B.K., Platt,G.N., Lu,S., Brewer,T.E., Lynn,J.S., Stroupe,M.E. and Jones,K.M. 2017-12 — GenBank