Protein

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Genbank accession
QPL22358.1 [GenBank]
Protein name
neck passage structure
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSLDNFRNRTIIWDTVNKDFPQPIQIMQGDVNARMLLIKIVDNGVEIDLTGHSLKLAYQYTNSSNSGFVMIPPKDLAKGEFILVIPTEMTTTGVIEANLILLNESLEQVIVSKSLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTEANLSDIEALQDSIAKISEAQANSLPLNVKWFGAKGDGVTDDTLSIQRAIDTGFSVFIPPGKYNVKELKGFSSGQIIQGISKAESWGGKNTQNITLLNGIGSADNYVIKNNVWTDGILPTAITVKNLSIEGGKKTNGILVGNSSTIEGVKIQNCINGLSKIKVSNVMNCQINNCTNGVMTAVDSKITNNFFYYNEVGINFDNSNDNSIVNNKIEWNRIGISLTKATFNLISNNIIDRNTTYGIYTFNTANTTILGNQFERNLTNHLYLQGSQFNISTNSFFRKNSEDNQSGIMAPDIAIFVKSVSNSMITNNFVNGKMFNKTGTDYSSNVNYSANTIDGINPDNISINIPETTVAHDQDTKIIIPLPSYFDGALNNPYNVEIVSQKMLITTQDGNFYSNGGIIKSIYMSKNGIELTIINHYKDDLKIAGTIKVRCVYPSLY
Physico‐chemical
properties
protein length:602 AA
molecular weight: 66388,22770 Da
isoelectric point:5,13378
aromaticity:0,07807
hydropathy:-0,19485

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
10–125
G3DSA:2.60.40.3350 IPR011050 IPR006626
IPR018913
13–147
IPR018913 IPR012334
IPR006626
280–303
IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
297–441
IPR039448
IPR011050
379–509
IPR011050
IPR022441
380–422
IPR022441
QPL22358.1
1 602
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage RH10
[NCBI] 		2777331 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPL22358.1 [NCBI]
Genbank nucleotide accession
MW041636 [NCBI]
CDS location
range 6863 -> 8671
strand +
CDS
ATGAGTTTAGATAATTTTAGAAATAGAACGATTATATGGGATACGGTTAATAAAGATTTCCCTCAACCAATACAAATAATGCAAGGCGACGTCAATGCAAGAATGTTATTGATTAAAATAGTTGATAATGGAGTTGAAATTGATTTAACTGGTCATTCATTAAAACTTGCATATCAATATACTAATAGTAGTAATTCTGGTTTTGTTATGATTCCTCCTAAGGACTTAGCTAAGGGAGAATTTATTTTGGTAATTCCTACCGAAATGACAACGACTGGAGTTATCGAGGCAAATTTAATTCTTCTCAACGAAAGTTTAGAGCAAGTTATCGTCAGCAAAAGTCTTACATTTATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAAATTGATGATTTCACTAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTAAATGACTTACATGCCCAAACTGAAGCAAATTTGTCTGATATAGAAGCTTTGCAAGATTCAATAGCAAAGATTTCCGAAGCACAAGCAAATAGTTTACCACTTAATGTCAAATGGTTTGGAGCTAAAGGAGACGGGGTAACTGATGACACTTTGTCAATTCAAAGAGCTATTGATACTGGTTTTTCAGTTTTTATACCTCCTGGTAAGTATAATGTAAAAGAATTGAAAGGTTTTTCATCAGGACAAATCATACAAGGAATTAGTAAAGCAGAGTCTTGGGGAGGGAAAAACACACAAAACATAACGCTCCTTAATGGAATAGGTTCTGCAGACAACTATGTGATAAAAAATAATGTTTGGACAGATGGTATTCTCCCCACCGCTATTACCGTAAAGAATTTATCCATAGAAGGTGGTAAAAAAACAAATGGAATACTTGTCGGAAACTCTAGTACAATTGAGGGAGTGAAAATCCAAAATTGTATTAATGGACTATCTAAGATAAAAGTTTCAAATGTTATGAATTGTCAAATTAACAATTGCACTAATGGAGTAATGACTGCCGTTGATTCAAAAATAACTAATAACTTTTTTTATTATAATGAAGTCGGTATAAATTTTGATAATTCAAATGATAACAGTATTGTGAATAATAAAATAGAGTGGAATAGAATAGGAATTTCCTTAACGAAAGCTACTTTCAATTTAATTAGTAATAATATTATTGACAGGAATACTACTTATGGAATATATACGTTTAATACGGCTAATACAACTATTTTAGGTAATCAGTTTGAAAGAAATTTAACAAATCATCTCTATCTTCAGGGTTCTCAATTTAATATTTCTACAAATTCTTTCTTTAGAAAAAATTCGGAAGATAACCAATCAGGAATAATGGCTCCTGATATAGCTATCTTTGTTAAGTCTGTGTCAAATTCTATGATAACAAATAATTTTGTTAATGGTAAAATGTTTAACAAGACGGGAACAGATTATAGCTCTAATGTTAACTACTCTGCCAATACGATAGATGGAATAAACCCTGATAACATCTCTATAAATATCCCAGAAACAACTGTCGCTCATGATCAAGATACAAAAATAATTATTCCTCTTCCAAGTTATTTTGACGGTGCATTAAACAATCCATATAATGTCGAAATTGTTTCCCAAAAAATGTTAATTACTACACAAGACGGAAATTTTTACTCTAACGGAGGAATCATAAAGAGCATTTATATGTCCAAAAATGGTATTGAGTTAACAATTATCAACCATTATAAAGATGATTTGAAAATAGCAGGGACAATAAAAGTAAGATGTGTATATCCAAGTTTATATTAG

Tertiary structure

PDB ID
e9fe588f64d3ef64f7527f2b7d17e059f3ca1e7159c466d777a3be3cdb2a589b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8067
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of 10 Lactococcal Skunavirus Isolated from the Same Canadian Cheddar Cheese Plant Dore,L., Perrault-Jolicoeur,A., Labrie,S., Rousseau,G., Tremblay,D. and Moineau,S. 2015 — GenBank