Protein

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Genbank accession
YP_010582167.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MNFVVNNIPDGVPVRVFIDEIGEDNDVTEDFEALKENAIFHVVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLSDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGRIIEYGYYDAGRGYLDIHPDGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVLVGDPIEQGLYLTVESNEVDGVVLKAQNGLGISFSYMSGYPSLSGSTGTIYDPSGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVISVSEGTVTFVVPGNLISKWQQIQPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGRSKTLASVTAEIQYQLLDENSVPYGQIYTAQGTVSGRTSDYNGVTIYADLPVASRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMSPNTQAVQSLIRLARDPDVGGLDLTVRNMDKLLAVQKEIEDYFGDKQAGEFCYTFDDYKTTMQDIVNTIADAIFCTPYRRGADILLDFERPRIGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNTKEVITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNTLKKISVSFSATEEGIFALPNRAVSVVKGSRMSTYDGYITAVNGLTVELSQPVKFTSGDDHSLVLKRRDGGVQSVKVTPGAHDRQVIMAEVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSDGFDSGFN
Physico‐chemical
properties
protein length:828 AA
molecular weight: 91046,43460 Da
isoelectric point:5,10661
aromaticity:0,09662
hydropathy:-0,37681

Domains

Domains [InterPro]
NF040662
328–808
NF040662
YP_010582167.1
1 828
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage St162
[NCBI] 		2024312 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010582167.1 [NCBI]
Genbank nucleotide accession
NC_069146 [NCBI]
CDS location
range 37892 -> 40378
strand +
CDS
ATGAACTTCGTTGTCAATAATATACCGGATGGCGTGCCGGTGCGCGTATTTATCGATGAGATAGGCGAAGATAACGATGTCACTGAGGATTTCGAAGCATTGAAAGAAAATGCGATCTTTCATGTTGTCGAGTCCGCTGGCGGCGGGGCTATTAAAGGTGTCATGAAGATTTTCAGTGTTATTTTAAAACCACTGGCGAAGCTTCTGTCCCCTTCAGTAAAAGGCGCGTCGTCAAACCTCGCCAACTCGCAAGCAGATTCACCAAACAACAGTCTTTCTGACCGTAATAATAAAGCGCGCCCCTATGAGCGTAGCTACGACATTTGCGGGACGGTGCAAACTATACCCAATAACCTCATGTCAACTTATAAAGTGTTTAACGCCGCTGGGCGTATTATAGAATACGGGTACTACGATGCCGGTAGGGGTTATCTTGATATACACCCTGACGGAATAACAGACGGGGACACCCGTGTGTCTGATATCACAGGAACATCAGTTGCCGTCTACGCGCCGTACACGTCGCCAAATAACACGTCAACGCCACAAGTACTGGTCGGAGACCCAATAGAGCAGGGGTTATACCTGACAGTCGAATCTAACGAAGTAGATGGCGTGGTTCTGAAAGCACAAAACGGACTTGGCATCTCGTTTTCTTACATGTCTGGATACCCTTCGTTATCCGGTTCCACCGGCACGATATATGACCCGTCAGGAGGGTCTGACTTCTCCGGTGTTCTTGTGCCAAATGATACGTTTTCTCTCGTATCCGCCTGGACAAATACAGATGTTGACCTTTCCGGTGGCGGCTATCAGGTAATAAGTGTTTCCGAAGGAACTGTTACTTTCGTAGTCCCCGGTAATCTTATAAGTAAATGGCAACAAATACAGCCTGGTTCATTTTTCCGGGGAGATGGCGAAGCATCGTTGCAACCGGACAACACCTATGAAAAAACGTTAACTGATTGGGTGTCCATAAACCGAACTGAGGTGGAACGTATTGTTGCCAACATAGCTGCTGCAAACGGGATGTACAAAGACAATGGTAGGTCTAAAACGTTGGCTTCGGTAACGGCTGAAATACAATACCAACTTCTTGACGAAAATAGCGTACCTTACGGCCAAATTTACACGGCGCAAGGAACCGTATCCGGGCGCACTTCTGACTATAACGGGGTGACTATATACGCAGATTTACCAGTAGCATCTCGTGTTCGCGTTAGGGCGAGAAGGGTAACAGACCTTGATTTCAATTTCGAAGGCTCAGTGGTAGACGAAATAACCTACGTTAACCTGTACGGCCAGACTCGCGATAACACTCCGCACTACGGCAACCGAACCACGGTTCACTCAATGCGTAAACAGACACCGCGCGCTGCCGAAGTTAAACAACCTCAGTTGCGCATGATTGCGACCGAGATGGTGTATAAATATCTCGGGAATGGAGTGTTTGAGGATACGATGTCACCTAACACCCAAGCAGTTCAATCGTTGATTCGCCTCGCCAGGGACCCGGACGTCGGGGGGCTTGACTTAACAGTAAGGAATATGGATAAGTTGCTTGCTGTTCAAAAGGAAATAGAGGACTACTTCGGCGACAAGCAAGCAGGAGAATTCTGTTACACCTTTGACGATTATAAAACAACAATGCAGGATATCGTCAACACTATTGCCGATGCTATTTTTTGCACGCCATACCGTAGAGGCGCTGACATTCTGCTTGACTTCGAGAGGCCTCGTATTGGGCCTGAAATGGTATTTACCCACCGCAGCAAGGCGGGAACCTCCGAAAAATGGACCCGAACTTTCAATGATGCACAGGTTTTTGACAGTTTAAAATTCTCTTACATAGACCCAAAAACTAACACTAAAGAGGTAATAACAATCCCTGAAACTGGCGGTTTGAAGACTGAAACATACGATTCGAAGGGGATACGCAACTATAAGCAGGCTTTCTGGGCTGCAAACAGACGGCACCAGAAAAACACTCTTAAGAAGATTTCGGTATCGTTTAGTGCCACGGAAGAAGGAATATTTGCGCTACCAAACAGGGCTGTTAGCGTAGTGAAAGGCTCCCGGATGTCTACCTATGATGGCTACATAACGGCGGTAAACGGCCTCACTGTGGAGCTGTCACAGCCTGTTAAATTTACGTCAGGGGACGACCACTCTCTTGTTCTCAAGCGGCGAGATGGTGGCGTCCAAAGCGTCAAAGTCACGCCAGGGGCGCACGACAGACAGGTGATTATGGCGGAAGTCCCTCAAGAGGCAATATACACCGGCAACAGCGCTTTAAAAACTGAGTTTTCATTTGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGATCCTGGCGACGACCGAACAGTTAAAATAACAGGGTTTAACTACGACAAGGACTTCTACAAATTTGATAATGTGCCGCCTTTTGGTCGCGCATTCTCGGATGGGTTCGATAGCGGTTTTAACTAA

Tertiary structure

PDB ID
ebf1b2c3b8eeda56e4bb38bd7d33901602b594e94b3ed388ef3e9397efb09e29
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2455
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank