Protein

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Genbank accession
AAC00550.1 [GenBank]
Protein name
minor structural protein gp89
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKQYYILNGDLKRIGTLSLDGATVFTSDTITHQYASADQTNSSYGENPDAEDTTQKRSKNRKSKEYNHYGTIVVPQRQPDSSKVVEGNYIAKHDDVLDRWYIFRIWHTSETLLASGLAATSAELIDLGLWELSHTIVPAKTYTNCTAKTAFQWLAQKLTWNLDMSKLTTTLTMSKIEFDGTSRASSMLQTLLQDYDLECDFYVKATSNGTITDKIFEVGNKLNSEIYSGTVFVGQNVTGCTREITGNIVTKLYVFGPNGETMASANGGKTYIVDDAANRQYNPNWRTTYLEGAYTSNSTTDAHGLKAIAKTILADTNHPQYAYTVTVPHTMHPRLGSVVRTVNTDFTPEMVTKERVMAVTESYADPSQNSIQFGEFQTVTRITPAWLSNFTSQIANAVQKAMRDSSSIDPVVLTPDGVDFDKSNSAKRVIIQAYEGGTNISSFLDTKGFIFRQLSESGQYGAPTFGYLQNVTSLKLGEYRATIENQYFSTTPEVQADQTNARSLGRLSPTARGKDATEQYVVKLSDGSYLSSTAYPGAGLDGHGNDTLYQHWTSDGKLIDDMMVASGGHGSSFGVKEENGSIWIYGITKNFNSADERFRISKFRYHGGSDIKATVTSNSSDFTVGCGFSTDDPVRVSYDAKHDLIGVVRGDGSFEVLNPAQALAGDHDVLYRIDLTQYGFNLNTQTFQSACLDFPYVYWHSGDYDMHDYRMLYCANVVHQGKEFELNYDFSQSLPLKFDIVEPETIWMQPSGNLLATFNCHDPQDGENTAHTHAMFEIPVITRPEINLPKGAIPE
Physico‐chemical
properties
protein length:796 AA
molecular weight: 88324,02920 Da
isoelectric point:5,25723
aromaticity:0,10553
hydropathy:-0,43367

Domains

Domains [InterPro]
IPR007119
57–375
IPR007119 IPR048799
IPR010572
141–378
IPR010572
AAC00550.1
1 796
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage LL-H
[NCBI] 		12348 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus delbrueckii
[NCBI] 		1584 Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus
Host Lactobacillus delbrueckii subsp. lactis
[NCBI] 		29397 Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAC00550.1 [NCBI]
Genbank nucleotide accession
EF455602 [NCBI]
CDS location
range 16904 -> 19294
strand +
CDS
ATGGCTAAGCAATACTATATCTTAAATGGCGATTTAAAAAGAATCGGAACACTGTCCTTGGATGGTGCAACCGTCTTTACTTCTGACACGATCACTCACCAGTATGCGTCAGCTGACCAGACTAACAGCTCATATGGCGAAAACCCGGACGCAGAAGACACAACGCAAAAACGAAGTAAAAACCGGAAGTCCAAAGAATACAACCATTACGGCACGATCGTGGTCCCACAACGCCAGCCGGACAGCTCAAAGGTGGTGGAAGGTAACTACATCGCAAAGCATGACGACGTGTTAGATCGTTGGTACATCTTCCGCATCTGGCACACAAGCGAAACTCTGCTCGCTTCAGGGCTGGCCGCAACTTCAGCCGAGTTGATCGACCTGGGGCTCTGGGAGCTGTCTCACACGATAGTCCCTGCCAAGACCTACACCAATTGCACGGCAAAGACAGCCTTCCAGTGGCTAGCTCAAAAGCTGACTTGGAACCTGGACATGTCCAAACTGACCACTACGCTGACCATGTCAAAGATCGAATTTGACGGGACCAGCCGGGCTAGCTCCATGCTTCAAACTCTCCTCCAAGACTACGACCTGGAATGTGACTTTTACGTGAAAGCCACGTCGAACGGCACGATCACGGACAAGATTTTCGAGGTCGGTAACAAGCTCAACTCTGAAATCTACTCCGGAACGGTCTTCGTTGGTCAAAATGTTACCGGATGCACGCGTGAAATCACGGGAAACATCGTCACCAAACTCTATGTCTTCGGGCCAAACGGCGAAACAATGGCTTCCGCGAACGGCGGTAAAACCTATATCGTAGACGATGCGGCTAACCGCCAGTACAACCCAAATTGGCGGACGACCTATCTGGAAGGTGCCTACACCAGTAACTCAACGACCGATGCACATGGGCTTAAGGCAATCGCCAAAACAATTCTGGCTGATACTAATCACCCGCAATATGCGTACACGGTCACAGTCCCACACACGATGCATCCCCGGCTGGGGAGCGTAGTTCGGACGGTCAACACGGACTTTACACCAGAAATGGTGACGAAAGAGCGTGTCATGGCCGTGACCGAAAGCTATGCTGATCCGTCACAGAACTCAATCCAGTTTGGTGAGTTCCAGACCGTAACACGGATTACGCCAGCTTGGCTATCAAACTTTACCAGTCAGATTGCCAACGCAGTCCAAAAGGCCATGCGGGATAGCTCATCCATTGATCCGGTTGTCTTGACACCGGACGGGGTGGACTTCGACAAGTCAAACAGCGCCAAGCGTGTTATTATCCAAGCGTACGAAGGTGGAACCAATATTTCCTCCTTTTTGGACACAAAAGGGTTCATTTTTCGGCAGTTGTCAGAGTCGGGGCAATATGGGGCACCTACTTTTGGATACTTACAAAATGTAACCAGTTTAAAACTGGGCGAATATCGGGCTACGATCGAAAACCAGTACTTTTCGACTACTCCAGAAGTCCAAGCCGATCAAACAAATGCCCGATCACTGGGTAGGCTGTCACCTACAGCTCGCGGCAAAGATGCCACTGAGCAGTATGTGGTCAAATTATCCGACGGATCATATTTATCAAGCACCGCTTACCCAGGAGCAGGCCTGGACGGGCACGGAAATGACACACTTTACCAGCACTGGACCAGTGACGGCAAACTAATCGATGACATGATGGTGGCAAGTGGTGGCCACGGATCCAGCTTCGGGGTTAAAGAAGAGAACGGCAGTATTTGGATTTACGGCATAACCAAAAACTTTAACAGTGCCGATGAAAGGTTCAGAATTTCTAAATTTAGATACCACGGCGGTAGCGATATTAAGGCGACCGTCACGTCCAACAGCAGCGACTTCACCGTGGGGTGTGGCTTCTCGACTGATGATCCAGTCCGGGTTAGCTATGACGCAAAGCACGACTTGATAGGCGTGGTTAGAGGAGACGGAAGTTTTGAAGTTTTGAATCCTGCCCAAGCACTGGCAGGCGATCATGATGTCCTTTACCGGATTGATTTGACACAATATGGTTTTAATTTGAACACTCAGACCTTCCAATCCGCCTGTCTGGATTTCCCTTATGTTTACTGGCATTCTGGCGATTATGATATGCACGACTACCGGATGCTTTACTGCGCCAACGTGGTGCACCAGGGCAAAGAATTCGAACTAAATTACGACTTTTCGCAATCCTTGCCTTTGAAGTTCGATATAGTCGAACCAGAAACGATCTGGATGCAACCAAGCGGGAATTTACTAGCCACATTTAATTGCCATGACCCACAAGACGGGGAAAACACAGCTCATACGCACGCCATGTTTGAAATTCCGGTAATTACTAGACCAGAAATTAACTTGCCTAAGGGAGCAATTCCAGAATAG

Tertiary structure

PDB ID
e8494a032386ad32bcd4594fdb0c78a08156518033b7a8b959bc5bc125289586
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7744
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Molecular comparison of the structural proteins encoding gene clusters of two related Lactobacillus delbrueckii bacteriophages Vasala,A., Dupont,L., Baumann,M., Ritzenthaler,P. and Alatossava,T. 1993 8497043 GenBank
Ribosome binding site consensus sequence of Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H Mikkonen,M., Vuoristo,J. and Alatossava,T. 1994 7514146 GenBank
Characterization of the genome region encoding structural proteins of Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H Mikkonen,M. and Alatossava,T. 1994 7828907 GenBank
A group I intron in the terminase gene of Lactobacillus delbrueckii subsp. lactis phage LL-H Mikkonen,M. and Alatossava,T. 1995 7496530 GenBank
Genetic and biochemical characterization of the Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H lysin Vasala,A., Valkkila,M., Caldentey,J. and Alatossava,T. 1995 8526515 GenBank
Genes and genome of Lactobacillus phage LL-H Mikkonen,M. 1996 — GenBank
Defective site-specific integration elements are present in the genome of virulent bacteriophage LL-H of Lactobacillus delbrueckii Mikkonen,M., Dupont,L., Alatossava,T. and Ritzenthaler,P. 1996 8633887 GenBank
The early gene region completes the nucleotide sequence of Lactobacillus delbrueckii subsp. lactis phage LL-H Mikkonen,M., Raisanen,L. and Alatossava,T. 1996 8917075 GenBank