Protein

View in Explore
Genbank accession
QIG76042.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
TF
Evidence Phold
Probability 1,00
Protein sequence
MAKKLMSGVPVASSEQIAEASILLLTSNNEEVKAPITRALGGTRAILDLDQTQSVSARLVSPNNVVEGITATFVANKGVSGLQVTKTAVTDANGFATVEFPTLARNTTHTMDLSYSTFLAVHRDDWFIAALAAATTLPTATSTGLVGDLIVVDKGVWSGSPTQYLFRYLRGTYVIPGANTDSYRLVADDADDIITAQVMAINAGGQTDWVSCNTIGPVANKPTTLVRAPVIAGNGDLGGHFIVTDPGEASNYAVPTVDEWEADEALIPAEKMTSTRYLIYSALSPGVPSSMPNAPAADNHNFTLNSNMYTGSNDMSLAIAANATENDYIYSNGVEPGVNGGNSGPQTWDLTLKHGPTATAIRQQVFIARVDSTGAVIGTEQQCARVGAAAGSEFAEFQPAQNGVYTFRVTYDFGKWNAGDRIRWRMRDRNTTASSANVRITVTNGPTFAAIPIGPRKALTNSRIFFTSTTALAGKALRLKRTFSNGAYTITAYSNAITLDPTVAQTVAPANTLAPTLYTATEFRQNTNIYADVGQWDNQPTSITFQWLRDDVDISGEVGTYHVINSADVGHVLKCRITATNAIGSTVITTDGVTALPPRMYYDIASGNDANDGQSTTTPKQTSAGSNSLASGSSAAFKATGVWGNRLLVGSNIRYESYDVGAKPSFGAPGVTFTVDAYTDDGSSSKSDVVLDGLRFIGDQRGIQTRFGSRWTIQNCDFDDIGFRPPSGQQENTQGIMIYKTNNIKILNNFMDRVYNDDIYIDTVNNVLINGNTILPCYGAEGDNIQTRADRFTPHQIGVEIGHNYLDMGSRKTGSGKGCIVTNMQSYAYIHDNELIGNNFGHGTDEGHHHSCCRNRMRHARKSSYSWLIGIGGYDNQGYSSNHQHFDNYLEDANRAHSYTGIGVSNYTGPISSRADIRCYDETIVNCTVGLRIDRPTSGIFRGWVFHNVGTSLSRVNFATVTEGTIHDFIYGDHFTYKGTIKRPPEVVTRSVVSGVRQVGQTLTATATVFDTAEVLAAFPGAVITRSYQWRRHARMPFPYTGYFLPFYGWGCDWIEGATGQSYTLAAEDVDCLVSRVERIHLTFTEGGVEKVVTALAYDGSYVGSAEIIA
Physico‐chemical
properties
protein length:1110 AA
molecular weight: 119817,92810 Da
isoelectric point:5,66988
aromaticity:0,09279
hydropathy:-0,21892

Domains

Domains [InterPro]
G3DSA:2.60.40.2700
518–594
G3DSA:2.60.40.2700 G3DSA:2.60.40.2700
IPR011050
593–969
IPR011050
QIG76042.1
1 1110
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_I4
[NCBI] 		2509735 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG76042.1 [NCBI]
Genbank nucleotide accession
MN988552 [NCBI]
CDS location
range 7244 -> 10576
strand +
CDS
ATGGCAAAGAAGCTTATGTCCGGCGTGCCGGTGGCCAGTTCCGAGCAGATCGCTGAAGCGAGCATCCTGTTGCTGACATCGAACAACGAAGAAGTGAAGGCCCCGATCACCCGCGCGCTCGGCGGCACCCGCGCGATCCTCGACCTCGATCAGACACAGTCCGTGAGCGCACGCCTCGTCAGCCCGAACAACGTTGTCGAAGGTATCACGGCGACCTTTGTTGCCAACAAGGGCGTCTCTGGTCTTCAGGTAACGAAGACGGCTGTGACCGACGCCAACGGCTTTGCGACGGTGGAGTTCCCTACCCTCGCGCGCAACACGACACACACCATGGACCTGTCGTACTCGACCTTCTTGGCCGTGCATCGCGACGACTGGTTTATCGCTGCGCTTGCCGCAGCCACGACGCTGCCGACCGCCACCTCTACTGGCCTCGTCGGCGATCTTATTGTCGTGGATAAGGGTGTTTGGAGCGGTAGCCCGACGCAGTATCTCTTCCGTTATCTGCGCGGAACCTACGTCATCCCCGGCGCGAACACGGACAGCTATCGCTTGGTAGCCGACGACGCCGACGATATCATCACGGCGCAGGTTATGGCGATCAACGCTGGTGGTCAGACCGATTGGGTAAGCTGTAACACCATCGGCCCGGTGGCGAACAAGCCCACGACGCTTGTCCGCGCTCCGGTTATTGCAGGCAACGGCGATCTCGGTGGTCATTTCATCGTTACCGATCCGGGCGAAGCCAGCAATTACGCCGTCCCTACCGTCGATGAGTGGGAAGCCGATGAGGCCCTCATCCCCGCCGAAAAGATGACATCGACACGCTACCTGATATATAGCGCACTGTCGCCGGGCGTTCCGTCGAGCATGCCGAATGCACCGGCAGCGGACAACCACAACTTCACCCTGAACTCCAACATGTATACCGGCTCCAACGACATGTCGTTGGCAATCGCAGCCAATGCCACCGAGAATGATTATATCTACTCGAACGGCGTGGAGCCGGGCGTTAACGGCGGTAATTCTGGTCCGCAGACGTGGGATTTGACCCTGAAGCACGGCCCCACGGCAACTGCAATCCGCCAACAGGTATTCATCGCTCGTGTTGACAGCACTGGCGCGGTTATCGGCACGGAGCAGCAATGCGCACGCGTCGGCGCGGCGGCAGGTTCGGAGTTTGCCGAGTTCCAGCCTGCACAGAACGGCGTTTATACTTTCCGCGTCACCTACGACTTCGGCAAGTGGAATGCTGGCGACCGCATTCGCTGGCGTATGCGCGATAGGAATACGACGGCCTCTTCGGCGAACGTTCGTATTACGGTCACCAACGGCCCCACCTTCGCCGCCATCCCCATCGGCCCGAGGAAGGCGCTGACGAACAGCCGTATCTTCTTTACGTCCACGACGGCGCTCGCTGGCAAGGCTCTCCGCCTGAAGCGCACCTTCTCGAATGGCGCATATACCATCACCGCCTACAGCAACGCCATCACGCTCGATCCTACCGTTGCGCAGACGGTCGCCCCGGCGAACACACTCGCGCCGACCCTCTACACGGCCACGGAGTTCCGCCAGAATACCAATATCTACGCGGACGTGGGTCAGTGGGATAACCAGCCCACCTCGATCACCTTCCAGTGGCTACGTGACGACGTGGACATCTCCGGTGAAGTCGGCACCTACCACGTCATCAACTCTGCCGACGTTGGGCACGTACTGAAGTGCCGCATCACCGCCACCAACGCCATCGGCTCCACCGTCATCACGACGGATGGCGTCACGGCTTTGCCGCCGCGCATGTATTACGACATCGCCTCTGGTAACGACGCCAATGATGGCCAGTCCACCACGACGCCGAAGCAGACCTCCGCAGGCTCGAACAGCCTCGCCTCGGGCTCTTCGGCAGCGTTCAAGGCGACGGGTGTATGGGGCAACCGCCTTCTGGTAGGCAGCAACATCCGCTACGAGAGCTACGATGTAGGCGCAAAGCCGTCGTTCGGCGCTCCGGGCGTCACCTTCACCGTCGATGCCTACACGGATGATGGTTCCAGCAGCAAAAGCGATGTCGTTCTCGACGGTCTTCGGTTCATCGGCGATCAGCGCGGCATCCAGACCCGCTTCGGCAGTCGCTGGACCATCCAGAACTGCGACTTTGACGATATCGGCTTCCGCCCGCCCAGCGGCCAGCAGGAAAATACACAGGGCATCATGATCTACAAGACGAACAACATAAAGATACTCAACAACTTTATGGACCGCGTCTACAACGACGACATCTACATCGATACCGTCAACAACGTGCTGATCAACGGCAATACGATCCTGCCGTGCTACGGCGCGGAAGGCGACAACATCCAGACCCGTGCAGACCGCTTCACGCCGCATCAGATCGGCGTCGAGATCGGTCACAACTATCTCGACATGGGTTCGCGCAAGACCGGATCGGGCAAGGGCTGCATCGTCACCAACATGCAGAGCTACGCCTACATCCATGATAACGAGCTCATCGGCAACAACTTCGGCCATGGTACCGATGAGGGCCATCACCACTCTTGCTGCCGTAACCGGATGCGCCATGCGCGCAAGAGCTCCTACTCGTGGCTCATCGGCATCGGCGGCTACGATAATCAAGGGTACTCGTCCAACCACCAGCACTTCGACAACTACCTTGAGGACGCGAACCGCGCACATTCGTACACGGGCATCGGCGTCAGCAATTACACGGGACCGATTTCCTCCCGTGCCGACATCCGGTGCTATGACGAAACCATCGTCAACTGCACCGTTGGTCTCCGCATCGACCGTCCGACTTCGGGCATCTTCCGTGGATGGGTATTCCACAATGTCGGCACTTCGCTCAGCCGTGTTAACTTTGCAACGGTGACCGAGGGTACGATCCACGACTTCATCTACGGCGATCATTTCACCTACAAGGGCACCATCAAGCGCCCGCCGGAAGTCGTCACCCGCTCGGTTGTCTCCGGTGTTCGTCAGGTCGGCCAGACGCTTACTGCTACGGCAACGGTGTTCGATACCGCTGAAGTGCTTGCTGCCTTCCCCGGTGCGGTCATCACCCGCTCGTACCAGTGGCGTCGTCATGCTCGCATGCCTTTCCCGTACACGGGCTACTTCCTGCCCTTCTACGGTTGGGGCTGTGACTGGATCGAGGGCGCGACAGGCCAGAGCTACACGCTGGCGGCTGAAGACGTTGACTGCCTCGTCTCTCGCGTCGAGCGCATTCACCTCACCTTCACCGAAGGCGGCGTCGAAAAGGTGGTGACGGCCCTCGCTTACGATGGTTCTTACGTCGGTTCGGCAGAGATCATCGCCTAA

Tertiary structure

PDB ID
dacb22f2e4311f4f3189d65a83b056d5368ccb5ab7cecbc186f4efe30d2dc727
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2354
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank