Protein

View in Explore
Genbank accession
ABY84316.1 [GenBank]
Protein name
host specificity protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,56
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MDFYFTDRSWHLLGIATAGEGPIHIVNDTDDQLISAGARTYSGTILFTPETSAKVKSMAAYGNYVLYKDTRGKAVFMTIMESNHDPLLGETTFTAEDAGIDLINETVGPYKAGKPMSIAEYINFFVTDSGFDIGLNEIPDLKRTLEWTGESDTALARILSVATQFDHAELEFSFQLVGTSVVQRLINIHKRIGTDKRITLYVDKDINKIVTSGNIWDLYTAITPTGGTPEAKDGDTSEQKPITLAGYQWTDPDGRFVLTSDGILLDPVANQQWSRLLSGGARPDAAGAYINRVNTYEATTQASLLQSALSDLKKHNHPVVNYETDIARLPDNVDIGDTVHLADENERLYLSARLLELKSSYSMDTHTATLGDYLIETDQVAAQYRELAEKIKNIPKTVQYWPWVRYADDDKGTNMSAFPANKKYMAVVYSNKSSVPSDNPADYAGKWALIKGADGADGVPGAKGADGRTSYFHTAWANDVSGQSGFTVSGGDGKKYIGTYSDFTQADSTNPADYNWALFKGADGDVGPQGPQGLPGAKGADGRTAYAHFAYANSQDGKTDFSTTAPNRKYIGFYSDFSSGDSTNPSDYNWSLIKGADGADGKDGVPGKPGADGKTPYFHIAYADSGDGRTNFSLDTPGSRKYIGSYTDFTQADSTNPALYSWQLVQGPKGDTGPQGPQGPQGPQGLPGSKDVPYTYIQLGTPTSPKKGDLWWHGTTLNDATALQYYNGSTWIDQSIQQAVLSIKKLQSIEIDSAEINSPTINVPFAHAPIEGGNILSTGKLALNGTSYTIDGTIEDTKGNPNGQRYHTELNPDGLLSYITQTDGTTKMDVSRISMGTLEFTHLASGLGKSATYISSTLDTVKVLQLANNNQMVWQGAMMPENGDVATMSVPLSQTLTGWLIAWSYFQNGKATHNNYAFTLIPKAALVYNTTGANYLRVTLTMREVGTTYKLLFYDDRHIVGNDENATGYPAKAVMTEVYAV
Physico‐chemical
properties
protein length:981 AA
molecular weight: 106434,70230 Da
isoelectric point:4,95360
aromaticity:0,10092
hydropathy:-0,43089

Domains

Domains [InterPro]
PTHR24637
441–691
PTHR24637
G3DSA:1.20.5.320
519–564
G3DSA:1.20.5.320
ABY84316.1
1 981
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Lrm1
[NCBI] 		496874 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus rhamnosus
[NCBI] 		47715 Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABY84316.1 [NCBI]
Genbank nucleotide accession
EU246945 [NCBI]
CDS location
range 15367 -> 18312
strand +
CDS
ATGGATTTTTATTTCACTGATCGTTCTTGGCACTTGCTGGGGATCGCCACAGCTGGTGAGGGGCCGATTCATATTGTCAATGATACTGATGATCAACTGATATCAGCTGGTGCGCGAACGTATTCAGGCACCATTTTATTTACGCCAGAAACCTCAGCTAAGGTCAAATCCATGGCTGCTTATGGCAATTATGTCTTGTACAAAGATACGCGGGGTAAGGCCGTTTTCATGACCATCATGGAATCAAACCATGATCCTTTACTGGGTGAGACCACTTTCACTGCTGAAGATGCCGGCATTGATCTTATCAATGAAACGGTTGGTCCGTACAAAGCCGGTAAACCAATGAGTATTGCTGAATACATTAATTTTTTCGTGACAGATTCCGGATTTGATATTGGCTTGAATGAAATTCCAGACTTGAAGCGAACACTTGAATGGACTGGTGAATCAGATACAGCACTGGCGCGAATTTTGTCGGTGGCAACGCAATTTGACCATGCGGAATTGGAATTCAGTTTTCAATTGGTGGGCACATCGGTGGTGCAGCGGTTGATTAACATTCATAAACGCATTGGGACCGATAAACGGATCACCTTGTATGTTGATAAGGATATCAACAAGATTGTAACTTCTGGTAACATCTGGGATCTGTATACAGCGATTACACCAACTGGTGGCACGCCGGAAGCTAAAGACGGGGACACGAGCGAACAGAAGCCAATTACGTTAGCTGGCTATCAATGGACTGATCCTGATGGTCGGTTTGTATTGACCTCAGATGGCATCTTGCTTGATCCGGTAGCCAACCAGCAGTGGAGTCGGCTATTAAGCGGTGGCGCAAGGCCAGATGCCGCTGGCGCCTATATCAATCGGGTCAACACTTATGAAGCGACCACGCAGGCTTCACTCTTGCAGTCAGCATTGAGCGACCTAAAGAAGCACAATCACCCAGTTGTCAACTATGAAACGGATATAGCGCGTCTGCCGGATAATGTGGATATTGGTGATACAGTGCATTTAGCTGACGAAAATGAGCGGTTATATCTATCGGCAAGATTACTTGAATTGAAGTCCAGTTATTCAATGGATACGCACACGGCGACTTTGGGCGATTATTTGATTGAGACGGATCAAGTTGCCGCTCAGTACCGTGAACTGGCTGAGAAAATCAAGAACATTCCCAAAACAGTGCAGTATTGGCCTTGGGTACGTTATGCCGATGACGACAAAGGTACCAATATGTCGGCATTTCCAGCCAACAAGAAGTACATGGCAGTCGTTTACAGTAACAAGTCATCTGTACCAAGTGACAATCCGGCTGATTACGCCGGCAAGTGGGCATTGATTAAGGGCGCTGATGGTGCTGATGGTGTTCCCGGTGCAAAGGGTGCAGATGGCCGTACAAGCTATTTTCACACCGCTTGGGCGAATGATGTAAGCGGTCAAAGTGGGTTCACGGTATCCGGTGGTGATGGCAAAAAGTATATTGGCACGTACAGCGACTTCACACAAGCCGATAGCACCAATCCAGCTGATTACAACTGGGCGCTTTTTAAGGGGGCTGATGGTGACGTGGGGCCGCAAGGGCCTCAAGGTTTGCCCGGTGCCAAGGGTGCTGATGGTCGTACCGCCTACGCTCACTTTGCTTACGCAAACAGCCAAGACGGCAAGACCGACTTCTCAACAACTGCCCCTAACCGTAAGTACATTGGCTTCTACAGCGACTTTTCATCTGGCGACAGTACGAATCCAAGTGACTATAACTGGTCACTGATTAAAGGTGCGGACGGTGCGGATGGTAAAGACGGGGTGCCGGGTAAACCGGGTGCCGATGGCAAGACACCGTACTTCCATATTGCCTATGCCGATAGCGGTGATGGTAGAACGAACTTTTCGCTGGATACCCCCGGATCTCGCAAGTACATCGGTAGTTATACAGACTTTACGCAGGCCGATAGCACGAATCCAGCACTTTACTCTTGGCAACTGGTGCAAGGACCAAAGGGCGATACTGGTCCTCAAGGCCCTCAAGGTCCGCAAGGGCCTCAAGGTTTGCCCGGAAGCAAGGATGTGCCATACACGTACATTCAGTTGGGAACACCCACAAGCCCCAAGAAAGGCGACCTATGGTGGCATGGGACAACGCTTAACGATGCCACAGCATTACAGTATTACAATGGGTCAACTTGGATTGACCAAAGTATCCAGCAAGCAGTGCTTAGCATCAAAAAGTTGCAATCAATTGAGATTGACAGCGCAGAAATTAATTCTCCAACAATAAACGTGCCTTTCGCTCATGCTCCTATTGAAGGTGGAAACATATTGTCAACTGGCAAGCTGGCTCTGAATGGCACTTCATACACCATTGATGGCACAATTGAAGATACTAAGGGTAATCCAAATGGTCAAAGATATCATACTGAGTTAAACCCCGATGGCTTACTGTCATATATAACACAAACTGACGGTACAACGAAGATGGATGTTAGCAGAATCTCAATGGGGACTCTTGAGTTTACACACTTAGCTAGTGGACTGGGAAAAAGTGCAACCTATATCTCAAGCACTTTAGACACTGTAAAAGTCTTGCAATTAGCAAATAATAACCAGATGGTTTGGCAGGGTGCTATGATGCCCGAGAATGGAGACGTTGCGACAATGTCGGTTCCACTGTCTCAAACACTAACCGGCTGGCTCATTGCTTGGAGTTATTTTCAAAATGGCAAGGCAACGCATAACAACTATGCCTTCACTCTCATACCAAAGGCTGCACTGGTATACAACACAACTGGGGCTAACTATTTGCGGGTAACTCTCACAATGAGAGAAGTTGGTACAACCTACAAACTTTTGTTTTATGACGATAGGCATATTGTTGGCAATGATGAAAACGCAACAGGATATCCAGCTAAAGCGGTTATGACTGAGGTATACGCAGTTTAG

Tertiary structure

PDB ID
7dc92ae414e1f1ccf51eba91bac4f89a0aea1590020c8e5b6dbf7f627800e463
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7534
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence and characteristics of Lrm1, a prophage from industrial Lactobacillus rhamnosus strain M1 Durmaz,E., Miller,M.J., Azcarate-Peril,M.A., Toon,S.P. and Klaenhammer,T.R. 2008 18539811 GenBank