Protein

View in Explore
Genbank accession
CDM21632.1 [GenBank]
Protein name
predicted tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,80
Protein sequence
MAESTIIQYPVGSQQYAIPFDYLARKFVVVSFINSNNPSDNIELRQGVDFQFLDQRNIELTIEATTQDIVQIRRFTDVELLVDFRDGSVLTANDLTTSELQAIHIAEEGRDQTYGLAQQFAEEAKSAAEASQEALDEVMAQAKWGYTAVGSFELGVPTPGVTLRNQAVSWGLGDDTAYYIWEGVLPKEVPEDSSPELTGGIAPGAWRYVGYNINVIKQQLAGDIPFKYESSPRANQGRILNHSPQTIRIATWNVWGGGSGHLYGNLGSPERYRDLQERILHRQLDFCGLQEFYTNYRYPVSMLQIFPLNTAFHGVVEPYNHVTGVVARNFNYGNVTLCVDSVISNTNHVYANAGNTDDKESRGYVRTVANIRGTRVAFYVTHMSYMTNRLIPMFTELVNAVKLDPETKIVVMGDFNTDREDLFKLFTDEGFVSHNNKEFNTNNTGGTWYIDNILTKGFGAVVEKGTQDSAAKLADHKMFFVEMEV
Physico‐chemical
properties
protein length:485 AA
molecular weight: 54400,14000 Da
isoelectric point:4,90489
aromaticity:0,11134
hydropathy:-0,30763

Domains

Domains [InterPro]
IPR005604
13–113
IPR005604 Coil G3DSA:2.10.10.80 IPR036691
IPR040775
160–210
IPR040775 IPR036691
IPR005135
250–463
IPR005135
CDM21632.1
1 485
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CR8
[NCBI] 		1455076 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter rodentium
[NCBI] 		67825 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Citrobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CDM21632.1 [NCBI]
Genbank nucleotide accession
HG818824 [NCBI]
CDS location
range 33271 -> 34728
strand +
CDS
ATGGCAGAAAGTACAATCATTCAGTACCCCGTTGGTTCCCAACAGTACGCCATTCCGTTTGACTATCTGGCCCGTAAGTTTGTTGTTGTTAGCTTTATCAATAGCAACAATCCGTCAGATAACATCGAGTTGCGCCAAGGTGTTGACTTTCAGTTCCTCGACCAGAGAAACATCGAGTTAACCATTGAAGCCACAACTCAGGACATCGTGCAGATTCGGCGCTTCACAGACGTTGAGCTTCTGGTTGACTTCCGTGATGGCTCGGTCCTAACCGCCAACGACCTCACCACATCCGAGCTTCAGGCTATCCACATCGCTGAGGAAGGACGAGACCAGACTTATGGTCTGGCCCAACAGTTTGCTGAGGAGGCGAAGAGTGCAGCAGAGGCTTCACAGGAGGCCCTTGACGAGGTTATGGCGCAGGCTAAGTGGGGATACACAGCAGTTGGTAGCTTTGAACTCGGTGTCCCGACTCCGGGTGTGACCCTGCGTAATCAGGCTGTATCTTGGGGACTGGGGGATGACACCGCGTATTACATCTGGGAAGGTGTGTTGCCCAAGGAAGTGCCAGAGGATTCAAGCCCGGAGCTTACTGGTGGCATTGCGCCCGGGGCGTGGCGCTACGTCGGCTATAACATCAACGTCATTAAGCAACAACTCGCTGGTGACATCCCGTTCAAGTATGAGTCCAGCCCACGAGCCAATCAGGGCCGAATCCTCAACCACAGTCCACAGACTATTCGAATTGCGACATGGAACGTGTGGGGGGGTGGGTCTGGGCACCTATATGGGAACCTCGGGTCCCCTGAGCGATACCGGGACCTACAGGAGCGAATCCTCCACCGCCAGCTCGACTTCTGTGGACTTCAGGAGTTCTACACGAACTACCGATACCCGGTGTCGATGCTTCAGATTTTCCCACTGAATACAGCTTTCCACGGTGTAGTGGAGCCATATAACCATGTGACTGGTGTTGTGGCCCGTAACTTCAACTATGGCAACGTTACCCTGTGCGTTGATAGTGTAATCTCCAACACCAACCACGTCTACGCCAACGCTGGGAACACCGACGATAAGGAGTCCCGTGGCTATGTTCGTACAGTCGCTAACATTCGCGGGACTCGCGTAGCCTTCTATGTTACACACATGAGCTATATGACAAATCGGTTGATCCCGATGTTCACTGAGCTGGTTAACGCCGTTAAGCTGGACCCTGAGACAAAAATCGTGGTGATGGGCGACTTCAACACTGACAGGGAGGACCTGTTTAAGCTGTTCACCGATGAGGGCTTCGTGTCTCATAACAACAAAGAGTTCAACACCAATAACACTGGCGGGACTTGGTATATCGACAATATCCTGACCAAGGGATTTGGCGCAGTGGTAGAGAAGGGGACTCAGGATAGCGCAGCTAAACTTGCAGACCACAAGATGTTCTTCGTAGAGATGGAGGTATAA

Tertiary structure

PDB ID
2c85015395c80bd57063937106bb15775ee2821468083ff9c19d610b3cace098
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7987
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterisation of Citrobacter rodentium bacteriophages and their in vivo assesment as antimicrobial agents Toribio,A.L. 2010 — GenBank