Protein

View in Explore
Genbank accession
YP_010648111.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,88
TF
Evidence Phold
Probability 1,00
Protein sequence
MQIWIHDKSMRKVCALNNNVPDMLPYSSSQWHTYLEYSTSTFDFTIPKIVNGKLHDDIKYINDQMFVSFYFDNSYHVFYVSQLVENDFNFQVTCNNTNLELAREVARPLADSGGAKSVEWYLRNLELLGFAGLEIGVNEISDRTRTLTFESQSGTKLEQLHSLMNQFDAEFIFRTELNRDGTMKRFIIDIYQEADKNHHGIGKVRGDVILYYQSGLKGVQVTSDKTQLFNAGVFTGANGVNLDSVEFEEKNELGQVEFYSRKGTSFVFAPLSRERYPSTMNPDSADNWTRKDFQTEYKDVESLKAYALRTIKQYAYPLLTYTVDVQSSFLDNYKDINLGDTVKIIDNNFRGGLALEARVSEMIISFDNPANNSVVFTNFKKLDNKPSDALQQRIDEIVSKSLPYHVEIRTTNGTVFKNGIGRSTVKPILKQGDKIVDATYRFVIDGTIKYVGMTYDMVASEINQPTTLTISAWVDNKEVASEEVTFVNVSDGKQGPKGDDGKTTYFHTAWSYSADGTDGFTTVYPNLNLLDGTKDFSGNWENGGEWTSDGTYKGLAVKKRVGQWAGIYKTFTAPKDGKYTFSAYVKSSGNAANIIRFVTLNGVDLYSSRRYFSNNFDWLRDSFTITLKAKDTIVARYEIAGSGTDSILWTAGHKWEEGSVATPWMPSASEVKTADYPSFIGHYTDFTQVDSPNPRDYTWSLIRGNDGKDGANGGENLIVNSAFPEDIDGWGFWDESTPNNNLHIATHGFYYNGTKPLFRLDNNTNGVVPASTKRFPVKRNTDYSLNIQIFATGNLKSVDIYFLGRKANETDKELTKVIHLKTHTGSPSTTQTVKWHLTFNSGDCDEGFIRINNNGTTDGKTSTLFFAELDCYEGTGDRAWQASSKDLEEEIDTKADDVLTQAQLNRLNETNSIIKAELDAKASLDTLNQWVEAYQNFVNANNANRAQAEKDLADASARVTKLENDLNDMSERWNFIDSYMAASNEGLVVGKKDKSSSIMFNPNGRISMFSAGNEVMYISKGVINIENGIFSKTIQIGRYREEQDLLNPDRNVIRYVGGA
Physico‐chemical
properties
protein length:1059 AA
molecular weight: 119173,05250 Da
isoelectric point:5,22120
aromaticity:0,11520
hydropathy:-0,51218

Domains

Domains [InterPro]
IPR010572
142–381
IPR010572 IPR008983 G3DSA:2.60.120.260 Coil
YP_010648111.1
1 1059
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage SW8
[NCBI] 		2419656 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010648111.1 [NCBI]
Genbank nucleotide accession
NC_070722 [NCBI]
CDS location
range 15505 -> 18684
strand +
CDS
ATGCAAATTTGGATTCATGATAAAAGCATGCGCAAGGTGTGTGCTTTAAATAACAACGTTCCTGACATGCTTCCATACTCGAGCAGTCAGTGGCACACCTACCTTGAATACTCAACCAGTACATTTGACTTTACGATTCCTAAAATTGTAAATGGAAAACTTCACGATGATATTAAATACATCAATGATCAGATGTTTGTATCATTCTATTTTGACAATTCCTATCACGTTTTCTATGTATCGCAACTCGTTGAAAATGATTTTAATTTTCAAGTGACTTGTAATAACACCAACCTTGAATTGGCAAGGGAAGTTGCACGACCACTTGCAGATAGTGGCGGTGCCAAAAGTGTTGAGTGGTATCTTCGGAATCTTGAATTGCTTGGTTTTGCAGGACTTGAAATAGGTGTCAATGAAATTTCTGATAGAACAAGAACGCTTACTTTTGAATCGCAAAGTGGCACAAAGCTAGAACAACTTCATAGCTTGATGAATCAATTTGATGCTGAATTTATTTTTCGTACCGAATTAAACCGAGACGGAACTATGAAACGTTTCATCATCGACATCTACCAAGAAGCAGATAAAAACCATCACGGAATTGGAAAGGTTCGAGGAGATGTCATTCTCTACTATCAAAGCGGTCTGAAAGGCGTTCAAGTAACTAGTGATAAGACACAACTATTTAATGCTGGTGTTTTCACTGGTGCAAACGGGGTTAATCTTGATAGCGTTGAGTTTGAAGAAAAAAATGAGTTAGGACAAGTAGAGTTCTATTCTCGAAAGGGCACTAGCTTCGTTTTCGCCCCACTATCAAGGGAACGCTACCCATCTACCATGAATCCAGACAGCGCTGATAACTGGACACGTAAGGATTTTCAAACAGAATACAAGGACGTTGAATCCTTAAAAGCTTACGCCTTGCGTACTATCAAGCAGTATGCTTATCCACTATTGACTTACACAGTAGATGTTCAGTCTAGCTTTCTGGATAACTATAAAGACATCAATCTAGGTGACACTGTTAAAATCATCGATAATAATTTTAGAGGTGGTTTAGCCCTCGAAGCGCGTGTATCTGAAATGATTATCAGCTTTGACAATCCTGCGAATAATTCAGTAGTTTTCACCAACTTTAAAAAGTTGGATAATAAACCATCGGATGCCTTGCAACAACGTATCGATGAGATTGTTTCTAAGTCACTGCCATATCATGTTGAGATAAGGACCACGAATGGAACAGTATTTAAGAACGGCATTGGTCGTTCTACTGTTAAACCAATTTTGAAACAAGGCGATAAAATTGTTGATGCAACTTATCGATTTGTGATTGACGGTACTATTAAATACGTAGGTATGACCTATGACATGGTAGCGTCAGAGATTAACCAACCAACCACGCTTACTATCTCAGCGTGGGTAGATAACAAAGAAGTAGCTTCAGAAGAAGTTACTTTTGTAAATGTATCAGATGGTAAACAAGGACCTAAGGGCGATGATGGGAAGACTACATATTTTCACACAGCATGGTCTTACAGCGCAGACGGCACTGATGGTTTCACGACTGTTTATCCTAATTTGAATTTGTTGGATGGTACTAAAGATTTTAGCGGTAATTGGGAAAATGGTGGAGAATGGACGAGCGACGGAACCTACAAAGGCTTAGCTGTTAAAAAAAGAGTGGGGCAATGGGCAGGAATTTATAAAACATTCACAGCACCTAAAGACGGAAAATACACTTTCTCAGCTTATGTTAAAAGTTCAGGAAATGCAGCAAATATAATTAGATTTGTGACCCTTAACGGTGTGGATTTATACTCTTCAAGAAGGTACTTTAGCAATAACTTTGATTGGTTAAGAGACAGTTTTACTATAACTCTGAAAGCCAAGGATACCATTGTGGCCAGATATGAAATAGCTGGTTCTGGAACAGATTCAATTCTATGGACGGCTGGGCATAAGTGGGAAGAGGGTTCAGTCGCTACCCCTTGGATGCCCTCGGCTAGCGAAGTCAAAACTGCTGACTATCCAAGTTTCATCGGACACTACACAGACTTTACACAAGTAGATAGTCCTAATCCTCGAGATTACACTTGGAGTCTGATACGAGGAAACGACGGGAAGGATGGAGCAAATGGTGGAGAGAATCTAATTGTTAATTCAGCATTCCCAGAAGATATTGACGGATGGGGTTTTTGGGACGAAAGTACACCTAATAACAATCTTCATATAGCTACACATGGATTTTACTATAACGGAACAAAACCCCTTTTTAGATTAGACAATAACACCAATGGTGTGGTTCCTGCATCAACAAAACGTTTTCCAGTCAAACGCAACACTGATTATTCTCTAAATATTCAGATATTTGCAACCGGAAACCTCAAGAGCGTTGATATCTATTTTCTTGGCAGGAAGGCGAATGAAACTGACAAGGAATTGACTAAAGTGATCCATTTAAAAACACATACAGGTTCACCATCAACCACACAGACGGTTAAATGGCATCTAACATTTAACTCTGGAGATTGCGACGAAGGGTTCATTCGTATTAATAACAATGGCACTACTGACGGTAAAACTTCTACGCTATTTTTTGCAGAACTAGACTGCTATGAGGGAACCGGTGACCGAGCGTGGCAAGCGTCGTCGAAAGATTTGGAAGAGGAAATAGACACCAAAGCCGATGATGTCCTAACACAAGCACAACTCAACAGACTGAACGAAACGAACTCTATTATTAAAGCTGAATTAGACGCTAAAGCGTCGCTTGATACACTCAATCAGTGGGTGGAAGCCTATCAAAATTTTGTTAACGCAAACAATGCCAATCGTGCACAAGCTGAAAAAGATTTAGCTGATGCAAGTGCTCGTGTAACTAAACTAGAAAACGACTTAAATGATATGTCAGAACGTTGGAATTTTATCGATAGCTACATGGCAGCATCAAATGAAGGTCTTGTTGTTGGTAAAAAAGATAAATCAAGCTCTATCATGTTCAATCCAAACGGGCGTATCTCAATGTTCTCAGCTGGGAACGAGGTAATGTACATTTCAAAAGGTGTCATCAATATCGAAAACGGTATTTTCTCTAAAACTATCCAAATCGGACGATATCGAGAGGAACAAGATTTATTGAATCCAGACCGTAATGTCATTAGATACGTAGGAGGTGCATAA

Tertiary structure

PDB ID
04f388bc0ff084bfde01307968dafb07791c4b81884c03a5814b1b99a1b8e0f7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7596
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations Lavelle,K., Martinez,I., Neve,H., Lugli,G., Franz,C., Ventura,M., Bello,F., Sinderen,D. and Mahony,J. 2018 — GenBank