Protein

View in Explore
Genbank accession
QVJ13164.1 [GenBank]
Protein name
host specificity protein J
RBP type
TSP
Evidence RBPdetect
Probability 0,58
TF
Evidence Phold
Probability 1,00
Protein sequence
MPPAIIAAVVAVGATAAASIGVISLTAAVVIGTLATVAGSLLTKQSLPSLGNYTSQQDRKQVLRSAAAPCSYVYGRTITSGLLAFAEEEKGNQEKNEWIHLLIVLASHPIDGVEKIWLGDDLIETYGEHATWSLINDPTVADSFLLSQCPSWKSDMIGKGLACLRVSLKFKQDKFPSGIPNIKAQIRGKRVYDPRTGLTQWSRNAALCIMDFYESDMLEVERADLDINMFIEAANICDQNVTNADGSVTKRYTIDGQFDADEAISSILDDMHEACGGEPTYMAGKHGLLVGAYYGPATMVLDESMIISDIEIVPESSFNEKVNVVTGTFIDAKGDYAEADFPAIRIEEWIEEDGNEFVQDKKFRFVTDEWQAQRLGQILLNRKRLGRTIKLTCNYKAYMFRPGYYVRLTVTPLGIINQEFRISSWELSGTEGVNLSLRQETPSVWNDAIGKPIDRPDLTVLPPSSVTPPWNLQYQVLEIGEVVQGVLTWLNSDSIVYNNVIIRQGGNTVFTVQVPGQQCRLSGLERGTYQAAVIAVNARGAMSTETVVDIVIQAPPMPSGCEIEQGYFSVTLKPRSAAIAQVSTQYDFWTSGETRLASTATAVVEAGANHEGQGNIWTSGNLRNNHTYWWYVRSVNAFGASAFLEVEALCYTSIEELLPMIDAEFQGTDAYKNLMKPIEMNYLAILEAARSTGANVDHQWANYGEVRADIITVKTTIANDQMSLADLETNVIAQGRYIDELTGQAADISAAVQQKMTSIVTSEGTAKASYTLNLGINRGGKYYSAGMAMSIEPDGAGSYKSTTLFKADRFGVYSSTTPGNYKLVFAIYNGQTYIEDAMIRDASITNAKIGNFIQSQNWNGTGQVGWHINKDGNAWFGNIYARGNIVATTGELNNVLIRESCTVLGKLSANQIEGDIYAAQFGLKNGYLIMGNEGNPQGYHPIVRITGQAFERIMTSNLALSLKSYERQYFRLYLSTNGGARQQIGYWDTGNGGNEEPIIWNFDNITLPPAGVGGYHDIELHVQENRSATAIFMNREYPSRAYAQNSNSQLVKVFYYDGEIQSYRKGQTLASALF
Physico‐chemical
properties
protein length:1074 AA
molecular weight: 118070,65230 Da
isoelectric point:4,97963
aromaticity:0,09590
hydropathy:-0,17728

Domains

Domains [InterPro]
IPR032876
319–426
IPR032876 IPR057587 IPR053171
IPR015406
751–891
IPR015406
QVJ13164.1
1 1074
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PSA28
[NCBI] 		2833440 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVJ13164.1 [NCBI]
Genbank nucleotide accession
MZ089737 [NCBI]
CDS location
range 1074 -> 4298
strand +
CDS
ATGCCCCCAGCGATAATCGCAGCGGTCGTAGCGGTGGGTGCGACCGCCGCAGCATCAATCGGCGTGATTTCCTTAACCGCCGCAGTGGTCATCGGGACCCTTGCGACGGTGGCGGGGTCACTCCTGACCAAACAGAGTCTCCCCAGCCTCGGCAACTACACGAGCCAACAGGACCGTAAGCAGGTCCTGCGCTCTGCCGCCGCTCCCTGTTCATACGTCTATGGCCGCACTATTACCTCCGGTCTGCTGGCGTTTGCCGAGGAAGAGAAAGGCAATCAGGAGAAGAACGAATGGATTCACCTCCTCATCGTGCTGGCCTCCCACCCCATCGACGGGGTCGAGAAGATATGGCTCGGGGACGACCTGATTGAGACCTATGGCGAACACGCCACGTGGTCACTAATCAACGACCCTACCGTAGCCGACTCGTTCCTACTGAGCCAGTGTCCATCGTGGAAGTCCGACATGATAGGCAAGGGACTCGCGTGTCTGCGCGTGTCGCTCAAGTTCAAGCAGGACAAGTTCCCGTCCGGCATCCCGAACATCAAAGCCCAGATTAGGGGCAAACGCGTATACGACCCCCGCACTGGTCTGACCCAGTGGTCGCGCAACGCCGCCCTGTGCATCATGGACTTCTACGAGTCGGACATGCTGGAGGTGGAGCGTGCTGACCTCGATATCAACATGTTTATCGAGGCAGCCAACATCTGTGACCAGAACGTCACAAACGCCGATGGCTCCGTGACGAAGCGCTACACCATTGACGGGCAGTTCGACGCTGACGAGGCCATCTCCTCCATACTGGACGACATGCATGAAGCGTGTGGCGGCGAGCCTACCTACATGGCAGGTAAACACGGCCTGTTGGTCGGTGCTTACTACGGCCCGGCCACGATGGTGCTTGATGAGTCCATGATAATCTCGGACATCGAGATAGTGCCAGAGTCGTCCTTCAACGAGAAGGTGAACGTAGTCACCGGGACGTTTATCGATGCCAAGGGCGACTACGCCGAGGCGGACTTCCCGGCCATCCGTATCGAGGAGTGGATAGAGGAGGACGGCAACGAGTTCGTGCAGGACAAAAAGTTCCGCTTCGTCACCGACGAGTGGCAAGCCCAGCGACTCGGGCAAATCCTGCTAAACCGTAAGCGCCTCGGTCGAACCATCAAGCTGACCTGCAACTACAAGGCGTATATGTTCCGTCCGGGCTATTACGTCAGGCTGACCGTGACCCCGCTGGGTATAATCAATCAGGAGTTCCGCATAAGCTCGTGGGAGCTGTCCGGCACGGAGGGTGTCAACCTGTCCCTGCGTCAGGAGACCCCGTCTGTGTGGAACGATGCTATCGGCAAGCCTATCGACCGCCCAGACCTGACCGTGCTGCCGCCGTCATCGGTCACGCCACCGTGGAACCTGCAGTATCAGGTCCTCGAAATCGGCGAGGTCGTACAGGGCGTCCTGACGTGGCTCAACTCCGACTCCATCGTATACAACAACGTTATCATCCGTCAGGGTGGCAATACGGTGTTCACGGTGCAGGTCCCCGGCCAACAGTGCCGCCTGTCCGGTCTTGAGCGCGGCACGTACCAAGCCGCCGTCATTGCAGTGAACGCTCGCGGGGCGATGTCCACGGAGACCGTGGTAGACATCGTCATTCAAGCCCCTCCGATGCCGTCAGGGTGTGAGATTGAGCAGGGATACTTCTCGGTCACGCTCAAACCACGCAGCGCAGCCATCGCGCAGGTGTCTACCCAGTACGATTTCTGGACGTCCGGGGAGACTCGCCTTGCGAGCACGGCCACGGCGGTGGTCGAGGCCGGGGCGAACCACGAGGGTCAGGGCAACATCTGGACATCGGGCAACCTGCGTAACAACCACACGTACTGGTGGTATGTCCGTTCCGTGAATGCGTTCGGCGCGTCGGCTTTCCTCGAAGTAGAGGCCCTATGCTATACCAGCATCGAAGAGCTTTTGCCGATGATAGACGCGGAGTTCCAAGGGACCGATGCATACAAAAACCTCATGAAGCCGATAGAGATGAACTATCTGGCCATCCTTGAGGCCGCACGCTCTACCGGGGCGAACGTGGACCACCAGTGGGCGAACTACGGGGAGGTCCGGGCGGACATCATCACGGTCAAGACCACTATCGCCAACGACCAGATGAGCCTCGCCGACCTCGAAACGAACGTCATCGCGCAGGGTCGATACATCGATGAGCTGACTGGTCAGGCCGCCGACATCTCCGCAGCAGTACAGCAGAAGATGACCTCCATCGTGACCAGTGAGGGCACGGCCAAGGCGTCCTATACGCTCAATCTCGGGATTAACCGTGGCGGCAAATACTACAGTGCTGGCATGGCCATGTCCATCGAGCCTGATGGTGCTGGCTCGTACAAGTCAACCACCCTGTTCAAGGCTGACCGCTTCGGCGTATATAGCTCCACCACGCCGGGCAATTATAAGCTGGTGTTCGCCATCTACAACGGGCAGACCTACATCGAAGATGCGATGATTCGCGACGCATCTATTACCAACGCCAAGATAGGCAACTTCATCCAGTCGCAGAACTGGAACGGCACGGGTCAGGTCGGTTGGCACATCAACAAGGATGGCAATGCGTGGTTCGGCAACATCTATGCACGTGGCAACATCGTGGCGACCACTGGTGAACTGAACAACGTACTTATCCGCGAAAGCTGCACGGTGCTCGGTAAGCTGTCGGCCAACCAGATTGAGGGTGACATCTATGCGGCCCAGTTCGGTCTCAAAAACGGATATCTCATCATGGGCAACGAGGGCAACCCGCAGGGCTACCACCCAATAGTGCGTATCACTGGTCAGGCGTTCGAGCGTATCATGACGTCCAACCTCGCCCTGAGCCTCAAGTCGTACGAGCGTCAATACTTCCGTCTGTACCTGAGCACCAACGGCGGGGCGCGTCAGCAGATAGGCTACTGGGACACCGGGAACGGCGGGAACGAAGAACCGATTATCTGGAACTTTGACAACATCACCCTGCCCCCGGCTGGTGTTGGCGGGTATCACGACATCGAGCTGCACGTACAGGAGAACCGCTCGGCCACCGCGATATTTATGAACCGCGAGTACCCGAGCCGTGCGTACGCACAGAATAGCAACAGCCAGCTCGTTAAGGTGTTCTACTACGATGGCGAAATCCAGAGCTATCGCAAAGGTCAAACATTAGCATCGGCTCTGTTCTAA

Tertiary structure

PDB ID
e29e1609d798399c53a370a097d1d7a9e40b7dd471c239278af0a8781f6b0219
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2214
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lytic bacteriophages targeting P. aeruginosa isolated from hospital wastewater Nordstrom,H.R., Evans,D.R., Finney,A.G., Westbrook,K.J., Yassin,M.H., Doi,Y. and Van Tyne,D. 2021-07-09 — GenBank