Protein

View in Explore
Genbank accession
YP_010647983.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,91
TF
Evidence Phold
Probability 1,00
Protein sequence
MQIWIHDKSMRKVCALNNNVPGMLPYSNSQWHTYLEYSTSTLDFVIPKIVNGKLHDDIKYINDQMYVSFYYDNSYHVFYVAKIVENDFSFQVTCNNTNLELAMEVARPLADSGGPKTIEWYLQNLELLGFAGLEIGVNEIXDRTRTLTFESQSGTKLEQLHSLMNQFDAEFIFRTELNRDGTLKKFVIDIYHRPDKNHQGIGKARGDVVLYYQSGLKGVQVTSDKTQLFNAGVFTGADGVNLDSVEFEEKNELGQVEFYSRKGTSFVFAPISRERYPSTMNPDSADNWTRKDFQTEYKDVESLKAYALRTIKQYAYPLLTYTVDVQSSFLDNYKDINLGDTIKIVDNNFRGGLALEARVSEMIISFDNPANNSVVFTNFKKLDNKPSDALQQRIDEIVSKSLPYHVEIRTTNGTVFKNGVGHSTVKPILKQGDKIVNATYRFVIDGTIKYSGMTYDMVASEINQPTTLTISAWVDNKEVASEEVTFVNVSDGKQGPKGDRGNDGLPGKDGIGLKTTTITYGLSDSDSTQPTDWTSQPPALVKGKYLWTKTVWTYTDSSSETGYQKTYIAKDGNDGTDGLPGKDGVGIKTTTITYAQGISGTVPPTNGWNSQVPNVPAGQYLWTKTIWDYTDNTSETGYSVAKMGEKGPKGDRGERGLQGPKGDQGIPGPKGADGRTQYTHIAYANSPDGNKDFSTSDSNREYIGIYVDFNIDDSNNPSDYSWTLVKGADGAQGVPGKPGADGKTPYFHTAWSYSADGTDGFTTVYPNLNLLEGTKYFSGDWWGRYGSQTDGTYKGLTVMKRTAQWVGISKTFTAPKDGTYTFSAYVKSSGNNVDIIRWININGVQDVEKAPMKSLGNNFDWFRDYFTLNLKAKETASVSYNISGSGSGTLWTAGHKWEEGPKATPWMPSASEVTTADYPSFIGQYTNYTQVDSPNPRDYTWSLIRGNDGKQGPQGIPGPKGADGRTQYTHIAYADTISGSGFSQTDVNKAYIGMYQDFNAEDSKNPQDYRWSKWKGSDGKDGIPGPKGADGRTPYVHFAYADSADGQKGFSLTQTGRKRYLGVLTNFFKEDSTNPSDYTWNDTAGSISVGGRNLLVKTNQGITNWNWQLSDGDKSVEEVKVDGIRAVKLIKGSTAANTGWNFIEYNGLLRELIQPKSKYVLSFDVKPSVDVTFYATLARGDFNEPLTDTVDMPKALANQWNKVSCVLTSKETLPNIAGQVVYLAGMPTTNGNWVIIKNIKLEEGDIPTQWTPAIEDIQDEIDSKADAAMTIEQINALNEMAGIIKAEMEAKASAEVLNNWIKNYQDFVKANETERAAAEKALVSSSQRVSTIAKELGELSDRWNFIDTYMSSSNDGLVIGKNDGSSSMMFNPNGRISMYSAGEEVMYISQGVIHIENGIFSKTIQVGRYREEQYHLNPDMNVIRYVGGF
Physico‐chemical
properties
protein length:1429 AA
molecular weight: 158394,12990 Da
isoelectric point:5,24473
aromaticity:0,11064
hydropathy:-0,56401

Domains

Domains [InterPro]
IPR010572
142–381
IPR010572 IPR050149 IPR008979
G3DSA:1.20.5.320
644–695
G3DSA:1.20.5.320 G3DSA:2.60.120.260
YP_010647983.1
1 1429
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage SW5
[NCBI] 		2483878 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010647983.1 [NCBI]
Genbank nucleotide accession
NC_070719 [NCBI]
CDS location
range 16682 -> 20971
strand +
CDS
ATGCAAATTTGGATTCATGATAAAAGCATGCGCAAGGTGTGTGCTTTAAATAACAACGTTCCCGGAATGTTGCCATATTCAAATAGTCAATGGCATACCTACCTTGAATACTCAACCAGCACACTCGATTTTGTGATTCCTAAAATCGTAAACGGGAAACTGCACGATGATATCAAATACATCAATGACCAGATGTATGTGTCGTTTTACTACGATAATTCTTACCACGTTTTCTATGTGGCTAAGATTGTTGAGAATGATTTTAGTTTTCAAGTGACTTGTAATAATACCAACCTTGAATTGGCAATGGAAGTTGCACGACCACTTGCAGACAGTGGCGGTCCCAAAACTATTGAATGGTATCTTCAAAATCTTGAGTTGCTTGGTTTTGCAGGTCTGGAAATAGGTGTCAATGAAATTTNTGATAGAACAAGAACACTTACTTTTGAATCTCAAAGTGGAACTAAACTAGAGCAACTTCATAGCTTGATGAATCAATTTGATGCAGAATTTATTTTCCGTACCGAATTAAACCGAGATGGTACTTTGAAAAAGTTTGTCATCGACATCTACCATCGTCCTGACAAAAACCATCAAGGTATAGGTAAGGCTAGAGGAGACGTCGTTCTCTATTATCAAAGCGGCCTGAAAGGTGTTCAAGTTACAAGCGATAAAACACAACTGTTTAATGCTGGTGTTTTCACTGGTGCAGACGGTGTTAATCTTGATAGCGTTGAGTTTGAAGAAAAAAATGAGTTAGGACAAGTAGAGTTCTATTCTCGAAAGGGCACTAGCTTCGTTTTCGCCCCAATATCAAGAGAACGCTACCCATCTACCATGAATCCAGACAGCGCCGATAACTGGACACGTAAGGATTTTCAAACAGAATACAAGGACGTTGAATCCTTAAAAGCTTACGCCTTGCGTACTATCAAGCAGTATGCTTATCCACTATTGACTTACACAGTAGATGTTCAGTCTAGTTTTCTGGATAACTATAAAGACATCAATCTAGGTGATACCATCAAGATTGTGGATAACAATTTTAGAGGTGGCCTAGCCCTAGAAGCTCGTGTATCTGAAATGATAATCAGCTTTGACAATCCTGCGAATAATTCAGTAGTTTTCACCAACTTTAAAAAGTTGGATAATAAACCATCGGATGCCTTACAACAACGCATCGATGAGATAGTTTCTAAGTCATTGCCATATCATGTTGAGATAAGGACCACAAACGGTACAGTATTTAAAAACGGAGTTGGCCATTCTACTGTTAAACCCATCTTGAAACAAGGCGATAAAATCGTTAATGCAACTTATCGATTTGTAATTGACGGTACTATTAAATACTCAGGTATGACCTATGATATGGTAGCATCAGAGATTAACCAACCAACCACGCTTACTATCTCAGCGTGGGTAGATAACAAAGAAGTAGCTTCAGAAGAAGTTACTTTTGTAAATGTATCAGATGGTAAACAAGGACCTAAGGGCGATAGAGGTAACGACGGACTACCAGGTAAGGACGGTATAGGATTAAAAACCACTACTATTACTTACGGTCTGAGTGATTCTGATTCTACTCAACCTACTGACTGGACTTCTCAACCACCAGCTTTGGTAAAAGGAAAATACCTTTGGACTAAGACGGTCTGGACATATACTGATTCATCTAGTGAGACTGGCTACCAAAAGACTTATATTGCTAAAGATGGAAACGACGGTACAGACGGGCTTCCTGGTAAAGATGGTGTTGGTATCAAAACCACAACCATAACTTACGCACAAGGTATATCTGGGACAGTTCCACCAACAAACGGTTGGAATAGTCAAGTGCCGAATGTGCCAGCAGGTCAGTACTTATGGACTAAAACAATCTGGGATTATACTGATAACACTAGTGAAACTGGATATTCAGTAGCTAAAATGGGTGAGAAAGGACCTAAAGGTGATAGAGGTGAGCGTGGATTACAAGGACCAAAGGGAGACCAAGGAATCCCGGGACCAAAGGGAGCTGACGGAAGAACACAGTACACCCACATAGCTTATGCTAATAGCCCAGATGGTAATAAAGACTTTTCAACGTCTGACTCTAATCGTGAATACATTGGTATATACGTTGATTTCAATATCGATGATTCAAACAATCCGAGCGATTACTCATGGACACTCGTTAAAGGTGCTGACGGTGCTCAAGGGGTACCAGGAAAACCGGGAGCTGACGGGAAGACTCCTTATTTTCACACGGCATGGTCTTACAGCGCAGACGGTACCGATGGTTTCACGACTGTTTACCCTAATTTGAATTTGCTTGAAGGGACTAAATATTTTAGTGGAGATTGGTGGGGTAGATATGGTTCGCAAACTGACGGAACATATAAAGGTCTAACTGTTATGAAAAGAACCGCTCAATGGGTCGGTATATCCAAAACATTTACTGCACCAAAAGACGGAACTTATACTTTCTCAGCTTATGTCAAAAGTTCAGGAAATAATGTAGATATAATTAGATGGATTAATATAAATGGTGTACAAGACGTTGAAAAAGCTCCTATGAAATCGCTAGGAAATAATTTTGATTGGTTTAGAGACTACTTTACGTTAAACTTGAAAGCAAAGGAGACTGCCTCTGTTTCCTATAACATAAGTGGTTCAGGTTCAGGTACTTTATGGACGGCTGGGCATAAATGGGAAGAGGGACCTAAAGCCACTCCTTGGATGCCCTCGGCTAGCGAAGTCACAACTGCTGATTATCCAAGTTTCATCGGACAATATACAAACTATACACAAGTAGATAGTCCTAATCCTCGAGATTACACTTGGAGCCTCATTAGAGGTAACGATGGTAAACAAGGACCGCAAGGAATACCTGGACCAAAGGGTGCTGACGGAAGAACGCAATATACACATATCGCTTACGCTGACACAATTTCAGGTAGTGGCTTTAGTCAAACAGATGTCAATAAAGCCTATATTGGTATGTATCAAGACTTCAATGCCGAAGATAGCAAAAATCCACAAGATTATCGTTGGTCTAAGTGGAAAGGTAGCGATGGTAAAGATGGTATTCCTGGTCCTAAAGGTGCGGACGGACGTACGCCTTACGTCCATTTTGCTTATGCCGATAGTGCCGATGGTCAAAAGGGTTTCAGTTTGACACAAACTGGACGCAAGCGCTATTTAGGTGTGCTTACCAACTTCTTCAAGGAAGACAGTACTAATCCTTCTGATTACACGTGGAACGATACTGCGGGTAGCATCTCTGTAGGTGGTCGAAACTTGCTTGTAAAAACCAATCAAGGTATTACTAATTGGAATTGGCAGCTTTCCGATGGCGACAAGAGCGTTGAAGAAGTGAAAGTTGATGGCATTCGTGCTGTAAAACTAATCAAAGGTTCAACAGCAGCAAACACTGGGTGGAATTTCATTGAATATAATGGCTTGCTGCGTGAACTCATACAGCCGAAGTCGAAGTATGTTCTTTCGTTCGATGTTAAACCTAGCGTTGACGTAACTTTCTATGCAACGCTAGCACGAGGTGACTTTAACGAACCATTGACTGATACTGTCGATATGCCTAAAGCATTAGCGAATCAGTGGAATAAGGTATCGTGCGTTTTGACAAGCAAAGAAACTTTGCCAAATATTGCAGGGCAAGTTGTATACTTAGCAGGTATGCCAACAACAAACGGTAATTGGGTAATAATTAAAAATATCAAACTTGAAGAAGGTGACATACCTACTCAGTGGACACCTGCGATTGAGGACATACAAGATGAAATTGATTCCAAGGCCGATGCTGCTATGACGATTGAACAGATTAATGCACTTAATGAAATGGCTGGAATCATTAAAGCAGAGATGGAAGCCAAAGCAAGCGCTGAAGTTTTGAATAACTGGATTAAAAATTACCAAGATTTCGTTAAGGCAAACGAGACCGAGAGAGCTGCAGCCGAGAAAGCTTTGGTTAGCTCAAGTCAGCGGGTGTCAACCATCGCTAAAGAGTTGGGTGAACTGTCTGATCGTTGGAATTTCATTGATACCTACATGAGCTCATCAAATGATGGGCTTGTGATTGGAAAGAATGACGGTAGCTCTAGCATGATGTTTAACCCTAACGGTCGCATTTCAATGTACTCGGCAGGGGAGGAGGTCATGTATATTTCGCAAGGTGTAATACACATCGAGAACGGGATCTTCTCGAAAACTATCCAAGTTGGTCGATATCGTGAGGAACAGTACCATCTTAACCCAGACATGAATGTCATTCGTTACGTAGGAGGTTTTTAA

Tertiary structure

PDB ID
4a4087fd28a226981db865a7643f91ba473284ca0fd7d3eee386d92175a314b9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8114
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations Lavelle,K., Martinez,I., Neve,H., Lugli,G., Franz,C., Ventura,M., Bello,F., Sinderen,D. and Mahony,J. 2018 — GenBank