Protein

View in Explore
Genbank accession
AMO43454.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,80
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADRFPLIVNASSRKIEELVAGDNLDLTGNGVIIAGDIGDGKYLKSDGGFVVWDNPGDVYLTQTQTLTNKTLESSILSGSLNTFSNIPNSALVNTGITINNQTVALGGTITTPDNNTSYTIGVTDGNIAAQKIVTLTGSDSLTDSFTIAVGSPASVPAGQNAVSLALERSGDTITLSGTVVDNNTITTLQADSNGTPQTGVMRISGSGGVTITQNTSTKTIDVFSRNDDTVTRLRGGVGQVYASGDFTILGGTEVTISQSPNGVTGDPEITINSSDTVTRVKGGGLGTLASGDLTITGGAGGNVTVSQSGSTINIDSENDNTITELGANNNSLASGKFKLQQAGATTLTQSYDAGSGVTTISISSTNDDTGAALSAGDGLSLSNNSFSLKNSGNLIDNRVSKWDDANGQFTNGIITDDGSTITINGDLNVLGINTILETSTLVVEDNTIELRKGSSLTGSDGGIQVNRTTQSDGIVTTFNILQWYEAGAYWRSYDGSVAKRFVTETDTQTLTNKTLTSPSMTNPELGSATATTYNGLNIATTSASTFEIVNLKTFKVDNTLTLKGSDGITIDFEGGGGINAKVAYNTYHLGQFSTTTSSQLSGKISDSTGAGSLVFAQNPVFSNSINSQDSTFSIIDSSVGTVNFAGAATDITIGSTSGTTTIAHGLTVDGNVILTDQVGRTLLVNGVANFDLADIQIRGTNATPIYIGRGGGEVATNTRLGYSALQSNQSGFENTAMGHSTLVSCVDGSENTAFGYNTLRDLTDGSMNVAIGSLAQAELESGDGNVVIGQGAGQNNVSGDYNLCLGHYAGHSVSGSGNVLIGPASTEDTLSPTFAPPSAGGNNQLVIGSGSGVWIRGDSSYNVRLENDLRVEGELRINGNLVVEGSTVSITSSTITIDDKNIELASVTNTTFSSSVTNGSADLTNVAVLGLADSANPTAGLIIGMTVSSPGGAIPAGTVINALNPAAQTITLSNAVTTSSATEQFVAQGPTDSAADGGGMIIKGTPVLNGGTGDKTFLYDHSRVEKYFVSTESIELANNKKFSIANQLVLDQTTLGSTVVNSSLTSVGILSGPTGLPALETDGAVVFGGRIIEEAFSNMSQEFSISAGVASIITAAANTICGKTTATNSAIQTWGFSTADPDGNTLQNGQTMTVTLIIDASPASTYGDVCTVDGASITNGVRWSGGSPPISTSNTDILTFLIVKDSSGNLRVYGQGNTDFS
Physico‐chemical
properties
protein length:1222 AA
molecular weight: 124776,29320 Da
isoelectric point:4,23231
aromaticity:0,05074
hydropathy:-0,06211

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-RIM44
[NCBI] 		1278485 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMO43454.1 [NCBI]
Genbank nucleotide accession
KU594607 [NCBI]
CDS location
range 179517 -> 183185
strand -
CDS
ATGGCAGATCGTTTTCCACTTATTGTTAATGCTAGTTCTAGAAAGATCGAAGAACTTGTAGCAGGTGACAATTTAGATCTCACTGGTAATGGAGTAATCATTGCTGGTGATATAGGTGACGGAAAATATTTAAAGAGTGATGGGGGATTTGTCGTATGGGATAATCCTGGTGATGTTTATCTGACTCAGACTCAGACATTAACTAACAAAACTCTTGAGTCATCCATCCTCTCAGGATCTCTCAATACATTCTCAAACATTCCAAACAGTGCTCTAGTTAACACTGGTATCACGATCAACAACCAGACTGTTGCTCTTGGTGGAACGATCACAACTCCAGATAACAACACATCATATACTATTGGTGTTACTGATGGAAACATTGCTGCTCAAAAAATTGTAACTCTCACTGGTTCTGATTCTCTTACTGATAGCTTCACGATTGCTGTAGGTTCTCCTGCTAGTGTTCCTGCTGGACAGAATGCAGTAAGTTTGGCACTGGAAAGGAGTGGAGACACTATCACCCTTTCAGGAACTGTTGTAGATAACAACACTATCACCACACTGCAAGCAGATAGCAATGGAACTCCTCAAACAGGAGTAATGAGAATCAGTGGTAGTGGTGGAGTTACTATCACACAAAACACTAGCACAAAAACTATCGATGTCTTCAGTAGAAATGACGACACCGTTACAAGACTAAGAGGTGGTGTTGGTCAGGTCTATGCTTCTGGAGACTTCACAATTCTAGGTGGAACTGAAGTCACGATTTCACAATCTCCTAATGGAGTTACTGGAGATCCTGAGATCACAATCAACTCTAGCGATACTGTTACTAGAGTAAAAGGTGGTGGTTTAGGAACTCTTGCATCTGGAGATCTAACAATTACAGGTGGAGCAGGTGGAAATGTAACTGTCTCACAATCTGGTAGCACAATTAACATTGACTCTGAAAATGATAACACCATTACAGAACTAGGTGCTAACAATAATTCACTTGCTTCTGGCAAATTTAAACTACAGCAAGCAGGAGCAACAACACTTACTCAATCATATGATGCTGGATCTGGAGTAACAACTATTTCAATCAGTTCTACAAACGATGACACTGGTGCTGCACTGTCTGCTGGCGATGGATTGTCTCTTTCTAATAATTCCTTCTCTCTAAAGAACTCTGGTAACCTCATCGATAACAGAGTCTCCAAGTGGGATGATGCTAATGGTCAGTTTACAAACGGCATCATCACTGACGATGGTTCTACTATCACAATCAATGGTGACTTGAATGTTCTTGGAATTAATACAATCCTAGAAACATCAACACTAGTTGTTGAAGATAATACTATTGAACTAAGAAAAGGTTCCTCACTAACTGGTTCTGATGGTGGCATTCAAGTCAATAGAACAACTCAATCTGATGGTATTGTAACTACATTCAATATACTACAGTGGTATGAAGCTGGTGCATACTGGAGATCATATGATGGTTCAGTTGCGAAAAGATTTGTAACTGAGACTGATACACAAACTCTTACCAATAAGACACTAACCTCTCCATCAATGACCAACCCCGAACTGGGGTCAGCAACAGCAACAACATACAATGGTCTGAACATTGCAACTACATCTGCATCTACATTTGAAATAGTAAACCTCAAGACATTTAAAGTTGATAACACTCTGACACTGAAGGGTTCTGATGGTATCACTATTGACTTTGAAGGTGGTGGTGGCATCAATGCAAAAGTTGCATACAACACCTACCACCTAGGACAATTCTCTACAACAACTTCCAGTCAGTTGTCAGGTAAAATTTCTGACAGCACTGGTGCTGGTTCTCTGGTATTTGCACAGAACCCTGTATTCTCTAATAGCATTAACTCTCAGGACTCTACATTTAGTATTATAGATTCTTCTGTTGGCACTGTTAACTTTGCTGGTGCTGCAACTGATATTACCATTGGTTCAACATCAGGAACTACAACTATTGCACATGGTCTAACAGTTGATGGCAACGTAATTCTAACTGATCAAGTTGGAAGAACCCTGCTAGTCAACGGTGTTGCCAACTTTGATCTTGCTGACATCCAGATTCGTGGAACAAATGCAACACCTATCTACATTGGTCGTGGTGGTGGTGAAGTTGCAACCAACACCAGACTTGGATATTCTGCTCTACAATCTAACCAATCTGGTTTCGAGAACACTGCCATGGGTCACTCTACCCTGGTAAGTTGTGTTGATGGCAGCGAAAACACTGCTTTTGGTTATAATACACTGAGAGATCTGACAGACGGTAGCATGAACGTGGCTATCGGTTCTCTAGCACAAGCAGAGTTAGAGTCTGGTGATGGTAACGTTGTAATCGGACAAGGTGCTGGTCAAAATAATGTTTCTGGAGACTACAACCTATGCTTGGGTCACTATGCAGGACATTCTGTAAGTGGTAGCGGCAATGTTCTAATCGGTCCAGCATCAACAGAAGATACACTAAGTCCAACTTTTGCTCCTCCATCAGCAGGTGGCAACAACCAGTTAGTTATTGGTTCAGGTTCTGGTGTATGGATTAGAGGTGATTCTTCATACAATGTCAGACTAGAAAATGATCTGAGAGTTGAAGGAGAATTAAGAATCAATGGTAACTTGGTAGTCGAAGGTTCAACTGTATCCATCACATCATCTACCATCACAATTGATGATAAAAACATTGAACTTGCTTCTGTCACAAACACAACCTTTAGTTCAAGTGTCACTAATGGTTCTGCAGACTTAACAAACGTTGCAGTTCTAGGTCTTGCAGACAGTGCAAACCCAACCGCAGGTTTGATTATTGGCATGACAGTCAGTTCTCCTGGCGGTGCTATTCCTGCAGGAACTGTTATTAATGCTCTAAATCCTGCAGCACAGACCATCACACTAAGTAATGCTGTTACAACCAGTAGTGCAACAGAACAGTTTGTTGCACAAGGTCCTACCGATAGTGCTGCTGACGGCGGTGGCATGATTATCAAGGGAACTCCAGTATTGAATGGAGGAACAGGAGACAAAACATTCCTATATGATCATAGCAGAGTTGAAAAATATTTTGTATCCACTGAAAGTATTGAACTTGCTAACAATAAAAAATTCTCTATTGCGAACCAACTAGTTCTTGATCAAACCACTCTTGGTTCTACTGTTGTCAATTCTTCTTTGACATCTGTTGGTATTCTTAGTGGTCCTACTGGACTACCAGCTCTCGAAACTGATGGTGCTGTTGTCTTTGGTGGACGTATTATTGAAGAAGCATTCAGTAACATGTCGCAGGAGTTCTCAATCAGTGCTGGAGTTGCTAGCATTATCACTGCTGCTGCTAACACTATCTGTGGTAAGACCACTGCAACAAACTCTGCAATTCAAACTTGGGGATTCAGCACTGCTGACCCAGATGGAAACACACTACAGAACGGTCAAACTATGACTGTAACTTTGATCATTGATGCTTCTCCTGCGTCTACATATGGTGATGTTTGCACTGTTGATGGAGCGTCTATAACAAATGGTGTTAGATGGTCTGGTGGTTCTCCTCCAATCTCAACATCCAACACAGACATTCTTACTTTCCTAATCGTGAAGGATAGTAGTGGTAACCTTAGAGTATACGGTCAAGGAAACACAGACTTCAGTTGA

Tertiary structure

PDB ID
27e3c1b44a8994131fe8a6401ecdd6e195be6bdabb205b9f962ca9aa030335b9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2491
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomic content and context of auxiliary metabolic genes in marine cyanophages Marston,M.F., Martiny,J.B.H. and Crummett,L.T. 2016-12 — GenBank