Protein

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Genbank accession
AGH26377.1 [GenBank]
Protein name
fiber
RBP type
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MSKQGLLASAKPGATTNTVLYKAPIDASASTVLSVTAQGGSNTSYDVAMKDYDQHVVLDASTYKLHTGDVFTGYRFNLGTAVGADQGLNVNQLLTSADGEKTAVFESFYIPPFTSIAVKNVAIRSVAVESVTGTFAVGNTISKGSGGNTSVATIFSVASGSGGSTLYIGPSTLNGSGSEFTDGDSITASGGATGTISSGGVGTAANEFTFTTSGGTEDLYLGTTLSILGDRTYRFDVSDSSMSSIDFKLSETVNGEWGPDGTAGNTDDGAEYTTGKTTNGTAGSSGAYVQYDLTANTSLPAALYYYEGTTGTAANSNFGGADRLLTTSSSYSYDSVFVYNVSGTWVDNTDTFTYNGVTYTVTSQTAGPYGFVRDYTGTALYVVLGEGSANIAGSDTFLDNPKLATGARSTVTVSSVTSSGATVETKHYIRKDNAITANTTEEIKSLVIGPGQRLVVENNDADCSFTLVGFEDSSTGFTTRAYAQTTGTSGSGGGS
Physico‐chemical
properties
protein length:495 AA
molecular weight: 50687,30120 Da
isoelectric point:4,34997
aromaticity:0,09495
hydropathy:-0,14889

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-RSM1
[NCBI] 		536444 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Prochlorococcus marinus str. MIT 9303
[NCBI] 		59922 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH26377.1 [NCBI]
Genbank nucleotide accession
HQ634175 [NCBI]
CDS location
range 35473 -> 36960
strand -
CDS
ATGTCTAAACAAGGATTACTTGCCTCAGCAAAACCAGGTGCGACTACCAATACGGTGCTCTACAAAGCACCTATCGATGCGTCTGCAAGTACGGTTTTGTCTGTGACTGCACAAGGTGGATCAAACACCTCGTATGATGTTGCTATGAAAGACTACGATCAACATGTAGTTCTGGATGCTTCAACTTACAAATTACACACTGGTGACGTGTTCACTGGTTATAGGTTTAACTTAGGTACAGCAGTTGGTGCTGATCAAGGTCTTAACGTTAATCAATTACTAACATCTGCTGATGGAGAAAAAACAGCAGTGTTTGAATCATTTTATATTCCTCCTTTCACTTCGATTGCAGTGAAAAACGTCGCAATCAGATCGGTTGCAGTTGAATCTGTAACTGGTACTTTCGCAGTTGGTAATACTATTTCAAAAGGATCAGGTGGTAATACATCTGTTGCAACCATTTTTTCTGTAGCATCTGGTTCTGGTGGTTCAACTCTTTATATCGGTCCCTCTACCTTGAACGGTTCTGGAAGTGAGTTTACTGATGGTGATTCTATCACTGCATCTGGTGGTGCAACTGGTACTATTTCATCTGGTGGTGTTGGTACTGCTGCAAACGAGTTTACATTTACTACCTCTGGTGGAACTGAAGATTTATATCTTGGAACTACATTAAGTATTTTAGGAGATAGAACCTATCGTTTTGATGTATCTGACTCAAGTATGAGTAGTATAGACTTCAAACTCTCTGAAACTGTAAATGGTGAGTGGGGTCCTGACGGGACTGCAGGTAACACTGATGATGGTGCAGAGTATACCACTGGTAAGACTACTAACGGAACTGCAGGTTCTAGTGGTGCATACGTTCAGTATGATCTCACTGCAAACACTAGTTTACCCGCTGCACTATACTATTATGAAGGAACAACTGGAACTGCTGCTAACTCAAACTTTGGAGGAGCAGACAGACTTCTCACTACATCAAGTTCATATTCTTATGACTCTGTTTTCGTTTACAATGTTTCTGGAACATGGGTAGATAACACAGATACCTTTACATATAACGGTGTAACTTATACTGTTACTAGTCAGACTGCAGGTCCTTATGGATTTGTTCGTGATTATACAGGCACTGCTCTGTATGTTGTTCTTGGAGAAGGTTCTGCAAACATTGCAGGTTCTGATACTTTCTTAGATAATCCCAAGTTAGCAACTGGTGCTCGTTCTACAGTAACAGTTTCTTCCGTTACTTCTTCGGGTGCAACAGTAGAGACTAAGCATTATATCCGTAAGGACAATGCTATCACTGCGAACACTACAGAAGAGATCAAGTCTCTTGTTATTGGACCAGGGCAAAGACTGGTCGTTGAGAACAATGATGCAGATTGTTCATTCACTCTAGTCGGTTTTGAAGACAGTTCTACTGGATTCACAACTCGTGCTTATGCTCAAACTACTGGAACTTCTGGTTCTGGCGGTGGAAGTTAA

Tertiary structure

PDB ID
9e39d9578d0b454c2b16ee79ce03063431cbc57357b2b93bc7daecebde285b14
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4689
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-RSM1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank