Protein

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Genbank accession
CDM21570.1 [GenBank]
Protein name
predicted tail tube protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MPLYTQSIKNLKGGISQQPDILRFQDQGETQINGWSSESDGLQKRPPTVFVKRLAKQRAAPITDVSKFHLINRDATEQYYIVFTGTNILVFDLDGNPYTVSGAMDYVTTSAPRDDIRVITVADYTFIVNRKKVVKEGTTKAHAGYDMKHRALINLRGGQYGRTLTVSINGGPKVEHKTPAGNDAENDPPKVDAQYIGNALRTLLVAAYPDWTFNLGSGYLEIVAPSGTSINSVETTDGYANQLITALIDTVQTISKLPLAAPNGYIIRIQGETNSSADEYYVMYDSSRKTWRETVEPGVTTGFDVTTMPHALVRKSDGNFEFKTLDWSQRGAGNDDTNPMPSFVDSTINDVFFYRNRLGFLSGENVIMSRSAGYFSFFPKSVATLSDDDPIDVAVSHPRISILKYAVPFAEQLLLWSDEVQFVMTSSGVLTSKSIQLEVGSEFAVSDEARPFAIGRSVFFSAPRGSFTSINRYFAVADVSDVKDADDTTGHVLSYIPNGVFDIQGSSTENFIAVTTTGANSRVYIYKFLFKDGVQLQASWSHWEFETGDMIMAAACIGSKMYIVRKHSWGVDLERLEFIKQATDIAGEPYRFHMDGKTVLTIPSDAYNVNANTTTFDMKLGFSDERPSPGRFIMADSTGAYIMLPEQSWDTTTNITIKGDWSGRTVFIGRAYTFTYGFSRFLIKYEDQNGTITEDSGRLQLRRAWVNYQQTGALIMKVKNQYREFLNTLNGYKLGNQNVGEVSIGDGQFRFPMNGDAMNTRLILESAYPTPVSIVGCGWEASYARKAKSI
Physico‐chemical
properties
protein length:790 AA
molecular weight: 87773,61240 Da
isoelectric point:5,65454
aromaticity:0,11266
hydropathy:-0,28633

Domains

Domains [InterPro]
IPR058003
1–790
IPR058003
CDM21570.1
1 790
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CR44b
[NCBI] 		1455075 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter rodentium
[NCBI] 		67825 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Citrobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CDM21570.1 [NCBI]
Genbank nucleotide accession
HG818823 [NCBI]
CDS location
range 22287 -> 24659
strand +
CDS
ATGCCACTTTATACACAATCCATTAAGAATCTGAAGGGTGGCATTAGCCAGCAGCCTGACATCCTCAGGTTCCAAGACCAAGGTGAGACCCAGATTAACGGATGGTCCTCTGAGAGTGATGGACTCCAGAAGCGCCCACCAACAGTATTCGTTAAGCGTCTCGCCAAGCAACGAGCAGCGCCAATAACTGACGTCTCAAAGTTCCACCTGATTAACCGTGATGCGACCGAGCAGTATTACATCGTGTTCACCGGGACGAACATTCTGGTCTTTGACCTTGATGGGAACCCTTACACGGTGTCCGGGGCAATGGATTACGTTACAACCTCAGCGCCACGAGATGACATCCGTGTCATTACAGTAGCTGACTACACGTTCATTGTGAACCGTAAGAAGGTTGTCAAGGAGGGAACCACTAAGGCACACGCGGGATATGACATGAAGCACCGTGCGCTGATTAACCTACGTGGTGGACAGTATGGTCGAACACTGACGGTCTCAATCAACGGTGGTCCAAAGGTTGAGCACAAGACTCCAGCTGGAAACGATGCCGAGAATGACCCTCCAAAGGTCGACGCTCAGTATATTGGTAACGCACTACGTACCCTTCTGGTCGCTGCTTATCCAGATTGGACGTTCAACCTTGGGTCTGGATACCTTGAGATTGTAGCACCTAGTGGGACCAGCATTAACTCAGTGGAGACGACAGACGGTTATGCCAACCAGTTAATCACAGCGTTGATTGACACCGTGCAGACTATCAGTAAGCTACCGCTTGCAGCGCCTAATGGTTATATCATCCGCATCCAAGGTGAGACCAACAGTAGCGCTGATGAGTATTACGTGATGTATGACTCTTCGCGTAAGACTTGGCGCGAGACTGTGGAGCCGGGCGTGACTACTGGTTTCGACGTGACGACGATGCCTCATGCTCTAGTTCGTAAGTCAGATGGTAACTTTGAGTTCAAGACTCTTGACTGGTCACAGCGTGGAGCTGGTAACGATGACACCAACCCGATGCCCTCCTTCGTGGACTCAACCATCAATGATGTGTTCTTCTACCGTAACCGCTTAGGGTTCCTGTCTGGCGAGAACGTAATTATGTCCCGGTCTGCTGGATACTTTTCGTTCTTCCCTAAGAGCGTGGCGACTCTAAGTGATGATGATCCAATTGATGTGGCTGTGAGTCACCCTAGAATCTCAATCCTGAAGTATGCCGTTCCGTTCGCTGAACAGTTACTCCTGTGGTCTGACGAGGTTCAATTCGTGATGACCAGCTCTGGTGTCCTGACCTCTAAGTCTATCCAGCTTGAAGTTGGCTCTGAGTTCGCTGTGTCTGATGAGGCCAGACCGTTTGCTATTGGACGTTCAGTCTTCTTCTCAGCGCCACGTGGCTCGTTCACCAGCATTAACCGTTACTTTGCGGTAGCTGACGTCTCTGACGTTAAGGATGCGGACGACACAACTGGTCACGTTCTGTCATACATTCCAAACGGAGTGTTTGACATCCAAGGGTCCTCTACCGAGAATTTCATCGCGGTAACTACCACTGGCGCGAATAGCAGGGTGTACATCTACAAGTTCCTGTTCAAAGATGGCGTCCAGTTGCAAGCCTCTTGGTCGCACTGGGAGTTTGAGACTGGTGACATGATTATGGCAGCTGCCTGTATCGGGTCCAAGATGTATATCGTCCGTAAGCACTCGTGGGGTGTGGACTTGGAGCGACTGGAGTTCATCAAGCAGGCTACTGACATCGCTGGAGAGCCTTACCGATTCCACATGGATGGAAAGACAGTCCTGACCATTCCGTCTGATGCCTACAATGTCAACGCGAACACCACAACGTTCGACATGAAGCTAGGCTTCTCAGACGAGCGGCCTTCACCGGGTAGATTCATCATGGCTGACTCCACTGGCGCTTACATTATGCTGCCTGAGCAGAGCTGGGACACTACGACCAACATTACAATCAAAGGAGACTGGTCAGGGCGTACAGTCTTCATTGGTCGAGCCTACACGTTCACCTATGGTTTCTCACGGTTCCTCATTAAGTATGAGGACCAGAACGGTACTATCACGGAGGACAGTGGTCGCTTGCAGTTACGCCGAGCTTGGGTGAACTACCAGCAGACCGGGGCGCTAATCATGAAGGTTAAGAACCAGTACAGAGAGTTCCTCAACACGCTGAACGGATACAAGCTGGGGAATCAGAATGTCGGAGAGGTGAGTATCGGTGACGGTCAGTTCCGCTTCCCGATGAACGGAGACGCAATGAACACAAGGTTAATACTTGAGTCAGCATATCCTACTCCAGTGTCCATCGTTGGTTGCGGCTGGGAGGCTTCATATGCCCGTAAAGCCAAATCTATATAA

Tertiary structure

PDB ID
8090a109126a51ba76f9337086d6ebe00832bee99319689ff41e1f2ea2286728
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9007
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Citrobacter rodentium bacteriophages and their in vivo assessment as antimicrobial agents Toribio,A.L. 2010 — GenBank
Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b Toribio,A.L., Pickard,D., Cerdeno-Tarraga,A.M., Petty,N.K., Thomson,N., Salmond,G. and Dougan,G. 2014 24874665 GenBank