Protein

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UniProt accession
A0A8S5M333 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MELINGNLYVSGIKMSKDGHTHDGYIKNVTAAAGSDINTVGTPSVTVTNSGTTSTLTFHQLKGATGSQGPKGDKGDTGATGATGATGPKGNTGPQGPKGNDGTSVHVSSITYQKGSSNTTKPTGT
Physico‐chemical
properties
protein length:125 AA
molecular weight: 12366,32210 Da
isoelectric point:9,26161
aromaticity:0,03200
hydropathy:-0,63760

Domains

Domains [InterPro]
IPR008160
63–102
IPR008160
G3DSA:1.20.5.320
75–123
G3DSA:1.20.5.320
A0A8S5M333
1 125
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctOkv13
[NCBI] 		2826314 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD76598.1 [NCBI]
Genbank nucleotide accession
BK014805 [NCBI]
CDS location
range 11587 -> 11964
strand +
CDS
ATGGAATTAATTAATGGTAACTTATATGTATCTGGCATAAAAATGTCTAAGGATGGTCATACTCATGATGGTTATATAAAGAATGTTACTGCGGCGGCAGGAAGTGATATCAATACTGTAGGTACTCCAAGTGTTACCGTTACTAACAGTGGCACTACATCGACTTTAACTTTCCATCAATTAAAAGGTGCAACTGGATCTCAAGGTCCTAAAGGAGATAAGGGAGATACTGGAGCAACAGGTGCCACAGGTGCAACAGGACCTAAAGGCAATACAGGACCTCAAGGTCCTAAAGGCAATGATGGAACTAGTGTTCACGTATCAAGTATTACATATCAAAAAGGCTCTTCAAATACAACCAAACCAACAGGAACATGA

Tertiary structure

PDB ID
be93a50ff477c8b4bdf175ce641c022209a9797266a9b2f38d09497337892161
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6376
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50