Protein

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Genbank accession
YP_010669925.1 [GenBank]
Protein name
virion protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAISTHTVSIAGTWTRVNLMEQLGEGLEWLGWHSIAGSGSSETGKICGFQTFYGGGELPAGAPYQPLYYDVFPVATTGIGTGASFLVQRCPFNGDNNTSSARVIDSVLVNRPGYGYTAGEVVTLSAEDIGGSANGATDMTIPVVIESDVSGGNSYVCTFTGYIPLNMEAWGRNGFVSGSCTNTYVEIQEGDTLGFDNNSSWDDIALCWRNHPINDTLVHEFTNENRVFNINGQFTSGGSVVNFTPLPGQAGKYYLREDSSDIRPYVNDDVGNVVVTAATSGISTVGFGTTNSWYHVDYTNTNRPWAIWRQSFDENKKFGATYRLFCAYDSNNTITQWVGSGWHPSTKTASATRYYSGGHGYGKRFAGVDGLDSGHLNSFYEYGYCSFESGVGSGQIEAHTNAYLTHGGVTNKQLDLNIYRSGIDPSFAVFSYYEPDASATRWDGRSSNAWFFHNFSQNVWDLDECFTSGTTFIDDNGQGGVNPTIRFTTWVGGTHDHSQSDEPAKRAGEFGYAGIDNEEDFTAYITTDYQSQIVPSRSSTYQGDHTEMLIYHRSTNSAMNRKNVGTNVGNNTVQDTVGVDFNPVIKGIPLSGKMVPCPYYLPDDFVLIDFYYGSSNEFIDQGDTITISGSEIYTVIVASYYQGSGTTGIAFCARTT
Physico‐chemical
properties
protein length:656 AA
molecular weight: 71507,20330 Da
isoelectric point:4,62098
aromaticity:0,13262
hydropathy:-0,35122

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SCSM1
[NCBI] 		2588487 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669925.1 [NCBI]
Genbank nucleotide accession
NC_070962 [NCBI]
CDS location
range 200708 -> 202678
strand +
CDS
ATGGCAATATCGACACATACAGTTTCTATTGCAGGAACCTGGACAAGAGTAAACCTAATGGAACAACTTGGTGAAGGTCTTGAGTGGTTAGGTTGGCATAGTATTGCTGGTTCTGGATCTTCAGAAACTGGTAAGATTTGTGGATTTCAAACATTTTACGGTGGTGGTGAATTGCCTGCAGGAGCACCATATCAACCATTATACTATGATGTATTTCCAGTAGCAACAACTGGTATTGGAACTGGAGCATCATTCTTAGTACAAAGATGTCCATTTAATGGTGATAATAACACCAGCAGTGCTAGAGTTATTGATTCGGTTTTGGTTAATCGTCCTGGTTATGGATATACTGCTGGAGAAGTTGTAACACTTTCTGCCGAAGATATTGGTGGTTCTGCAAATGGTGCAACAGATATGACAATTCCAGTTGTCATTGAATCTGATGTGTCTGGTGGTAATTCTTATGTTTGTACATTTACAGGTTATATCCCTCTCAATATGGAAGCATGGGGTAGAAATGGATTTGTTTCTGGATCATGCACTAACACTTATGTCGAAATTCAAGAAGGTGACACTTTAGGTTTTGATAATAATAGTTCTTGGGATGATATAGCACTTTGTTGGAGAAATCATCCAATTAATGATACTTTAGTGCATGAATTTACTAATGAAAATAGAGTTTTTAATATTAACGGTCAGTTTACAAGTGGTGGTTCAGTTGTAAACTTTACTCCATTACCTGGTCAAGCAGGAAAATATTATCTACGTGAAGATAGTTCAGACATTAGACCTTATGTCAATGATGATGTAGGTAATGTAGTTGTAACTGCAGCAACTTCTGGTATTTCTACAGTTGGATTTGGTACAACCAACAGTTGGTATCATGTTGACTATACGAATACTAACAGACCATGGGCAATTTGGAGACAAAGTTTTGACGAGAATAAAAAGTTTGGTGCAACATATAGATTATTTTGTGCATATGACAGCAACAATACTATCACTCAATGGGTTGGTAGTGGATGGCATCCTTCAACAAAAACTGCATCTGCTACTAGATATTATAGTGGTGGACATGGATATGGTAAGAGATTTGCTGGAGTAGATGGATTAGATAGTGGTCATCTTAATTCCTTTTATGAATATGGTTATTGCTCATTTGAAAGTGGAGTGGGTTCTGGTCAGATAGAAGCACATACAAATGCATATTTAACTCATGGTGGAGTTACAAACAAACAACTTGATTTGAATATTTACAGATCAGGAATTGATCCAAGTTTTGCAGTATTTTCGTATTATGAACCAGATGCATCTGCAACAAGATGGGACGGGAGAAGTAGTAATGCTTGGTTCTTCCATAACTTCTCCCAAAATGTTTGGGATCTAGATGAATGCTTTACTTCAGGAACAACATTTATTGATGATAATGGACAAGGTGGTGTAAATCCAACAATTCGTTTCACTACATGGGTTGGAGGAACTCATGATCATAGCCAGAGTGATGAACCAGCAAAACGTGCTGGTGAGTTTGGTTATGCTGGAATTGATAATGAGGAAGACTTTACTGCATATATTACTACTGACTATCAATCACAAATAGTTCCATCAAGATCATCTACTTACCAAGGTGATCATACTGAAATGTTGATTTATCATAGATCAACAAATTCTGCAATGAATCGCAAAAATGTTGGAACTAATGTTGGAAATAACACAGTACAAGATACGGTAGGTGTTGATTTCAATCCAGTTATTAAAGGAATTCCACTTAGTGGAAAGATGGTTCCTTGTCCTTATTATCTACCAGATGACTTTGTATTGATTGACTTCTATTACGGTTCAAGTAATGAATTCATTGATCAGGGAGATACAATTACAATTAGTGGTAGTGAAATATACACAGTAATTGTTGCTTCATACTATCAAGGATCAGGAACAACAGGTATTGCATTCTGTGCGAGGACAACCTAA

Tertiary structure

PDB ID
4f7ef7741b3be94029b4b96517b780b1ec61791e43c71c99244e0d9217c86796
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2997
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and proteomic characterization of cyanophage S-SCSM1 provides new insights into understanding the viral gene diversity and phage-host interactions Wang,Q., Xu,Y., Jiao,N. and Zhang,R. 2022-10-26 — GenBank