Protein

View in Explore
Genbank accession
XCD29412.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,62
Protein sequence
MGLVSQSTKNLKGGISQQPNILRFSNQGEVQINGWSSETQGLQKRPPTTFLKRLANVGFLGAKPLVHLINRDAQEQYYVGFSGAGLSVWDLKGNSYTVRGYNGYANCANPRTDLRIITVADYTFVVNRNTVAQMSGALTWPSYPRLDGRALINVRGGQYGRTLSITINGDGSGSSPQASIAMPNGSAEKVPAGKPYAGMNQVDMTDAGWIAAELARQLTATLGPSGWSFQSGTGWILITAPAGDNLRQIATKDGYADTLLNGFIYQVQSFNKLPATAPSGYIVEITGESARSGDNYWVQYDAASKVWKETAKPKIIAGINGATMPHALVRAADGQFDWTPLSWDGRNAGDDDTNPMPSFIGSTINDVFFFRSRLGFLSGENVIMSRTSKYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSNGILSSKTIELDLTTEFDVSDGARPYGIGRGVYFSAPRASFTSLKRYYAIQDVSDVKSAEDVSAHVPSYLPNTVHAIHGSGTENFVSILSDGAPGNVYIYKFLYLNETLQQQSFSHWNFGDNTKILAAASIGSYLYLMAERPEGICLERMEFTQHTIDFAIEPYRAYMDMKKQVTLGAYNIDTNQTELDLTSVYGGVPGADAVFYTLDQQGVINEFAGPWNGTSKLYFTGNRKGEQMIIGKKYTFQYEFSKFLIKQTADDGSTRTEDIGRLQLRRAWLNYEQSGSFEINVNNGSTEYVYVMSGGRLGQQIVLGDLSLGTGQYKFPVSGNALNQRVTITSDTPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:805 AA
molecular weight: 88223,74890 Da
isoelectric point:5,88769
aromaticity:0,11180
hydropathy:-0,27366

Domains

Domains [InterPro]
IPR058003
1–805
IPR058003
XCD29412.1
1 805
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PMBT23
[NCBI] 		3137284 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCD29412.1 [NCBI]
Genbank nucleotide accession
PP554577 [NCBI]
CDS location
range 17969 -> 20386
strand +
CDS
ATGGGTCTCGTTAGTCAATCCACAAAGAACCTCAAAGGAGGTATCTCGCAACAACCGAACATCCTGCGGTTCTCCAACCAAGGCGAGGTGCAGATCAACGGATGGTCCTCGGAGACCCAAGGTCTTCAGAAGCGTCCACCGACCACGTTCCTTAAACGTCTCGCCAACGTGGGCTTCCTCGGGGCCAAGCCTCTGGTCCACCTGATCAACCGTGACGCCCAAGAGCAATACTACGTGGGCTTCAGTGGAGCTGGGCTGTCCGTATGGGACCTCAAGGGGAACAGCTACACGGTGCGTGGCTACAATGGCTATGCCAACTGCGCAAACCCTCGGACCGACCTGAGGATCATCACCGTCGCTGACTACACGTTCGTTGTGAACCGGAACACCGTGGCGCAGATGAGCGGGGCATTGACATGGCCTTCCTATCCTCGACTCGATGGCCGTGCCTTGATCAACGTGCGTGGTGGTCAGTATGGCCGCACCCTGTCAATCACCATCAACGGTGACGGCTCTGGTAGCTCCCCTCAGGCGTCCATTGCGATGCCTAACGGTTCCGCTGAGAAGGTGCCTGCTGGGAAGCCTTACGCTGGCATGAACCAAGTGGACATGACGGACGCTGGCTGGATTGCTGCTGAGCTGGCTCGCCAACTGACGGCGACTCTGGGGCCTTCTGGCTGGTCTTTCCAGAGTGGTACTGGCTGGATCTTGATCACGGCACCCGCTGGGGACAACCTGCGCCAGATCGCAACGAAGGACGGCTACGCTGACACCCTGCTCAATGGGTTCATCTATCAGGTCCAATCATTCAACAAGCTGCCCGCAACGGCACCCTCTGGGTACATCGTTGAGATCACCGGGGAGAGCGCTCGCTCTGGGGACAACTACTGGGTCCAGTATGACGCCGCATCGAAGGTCTGGAAGGAAACAGCGAAGCCCAAGATCATCGCTGGGATCAATGGGGCGACCATGCCTCATGCTCTTGTGAGGGCCGCTGACGGGCAATTTGACTGGACACCTCTGTCGTGGGATGGACGTAACGCTGGTGACGATGACACGAACCCGATGCCCAGCTTCATCGGATCAACGATCAATGACGTGTTCTTCTTTCGGAGCCGCTTGGGATTCCTGAGTGGAGAGAACGTGATCATGTCGAGGACCTCGAAGTATTTCAACTTCTTCCCATCGAGTGTGGCGACCCTGAGCGATGACGATCCAATCGACGTGGCGATCAGTCACAACCGCATCTCGATCCTGAAGTATGCTGTTCCGTTCTCTGAGCAACTGCTGCTCTGGTCGGACCAAGCTCAGTTCGTACTGTCGAGCAATGGCATCCTGTCGAGCAAGACAATTGAGCTGGACCTGACCACTGAGTTCGACGTGAGCGATGGAGCCCGTCCCTATGGGATTGGTCGAGGCGTTTACTTCAGTGCCCCACGAGCGTCCTTCACGTCCCTCAAACGGTACTACGCGATTCAGGATGTCTCTGACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCAAGCTACCTGCCGAACACCGTCCACGCGATCCATGGGTCTGGCACTGAGAACTTCGTTTCGATCCTCTCGGATGGCGCACCGGGCAACGTCTACATCTACAAGTTCCTGTACCTCAATGAGACCCTGCAACAGCAGTCGTTCTCTCACTGGAACTTTGGGGACAACACTAAGATCCTCGCAGCGGCCTCGATTGGCTCCTACCTGTACCTGATGGCTGAACGGCCTGAAGGGATCTGTCTGGAACGCATGGAGTTCACACAGCACACCATCGACTTCGCCATTGAGCCTTATCGGGCCTACATGGACATGAAGAAACAGGTCACGCTGGGTGCGTACAACATCGACACCAACCAAACTGAGCTGGACCTCACAAGCGTTTATGGCGGGGTTCCGGGTGCAGACGCTGTGTTCTATACCCTCGACCAGCAAGGCGTCATTAACGAGTTCGCAGGGCCTTGGAATGGTACCTCGAAGCTCTACTTCACGGGCAACCGTAAGGGCGAGCAAATGATCATCGGCAAGAAGTACACCTTCCAGTACGAGTTCTCCAAGTTCCTCATTAAGCAAACCGCTGATGATGGCTCGACGAGAACTGAGGACATAGGTCGGTTGCAGCTTCGCCGTGCATGGCTCAACTACGAACAGTCGGGCTCCTTCGAGATCAACGTCAACAACGGCTCCACTGAGTACGTCTACGTGATGTCTGGTGGTCGCCTTGGGCAACAGATAGTGCTGGGCGACCTCTCGCTGGGCACTGGTCAGTACAAGTTCCCGGTCTCGGGCAATGCTCTCAATCAACGAGTCACCATCACCAGCGATACACCGAACCCACTCAACGTGATCGGCTGTGGCTGGGAAGGTAACTACATCCGCCGTTCTTCCGGCATCTAA

Tertiary structure

PDB ID
ccf0c80856266769eab90f2ea5fb037ee575d8a80c04a9db0177091e030c3df2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2486
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
This phage originates from the Bacteriophage catalogue of the Bacteriophage Competence Centre, Department of Microbiology und Biotechnology, Max Rubner-Institut, Kiel, Germany Sprotte,S. and Brinks,E. 2020-12-18 — GenBank