Protein

View in Explore
Genbank accession
YP_001700593.1 [GenBank]
Protein name
bacteriophage host specificity protein; tail fiber; Lambda gpJ homolog
RBP type
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGKGGGKGHTPREAPDNLKSTQLLSVIDAISEGPIEGPVNGLQSVLVNQTPVVDRDGNTNIHGVKVVYRVGEQEQTPLEGFESSGAETVLGVQVKYDNPVTRTITAANIDRLRFTFGVQSLVEANSKGDRNPTSVRLQIHLERYGQWVVEKEITITGKTTTQYLASVIVDNLPPRPFGIRMVRVTADSTTDQLQNNTVWSSYTEIIDVRQRYPNTAVIGLQVESEQFGSQQVTRNYHFFGRIIHVPSNYDPVARTYSGIWDGTFKPAYSNNPAWCLWDVLTHPRYGMGQRIGAADVDRWALYAIGQYCDQMVPDGFGGTEPRMTFNAYLAQQRKAWDVLTDFCSAMRCMPVWNGQMMTFVQDRPSDTVWTYTRSNVVMPDEGTPFRYSFSARKDRHNAVEVNWIDPDNGWQTSTELVEDTVAISHYGRNLVKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEVCDEDYAGISLGGRILSVDRARRILTLDREITLPSSGTTLISLMDGEGLPVSVDVQSVTDGVQVQVSRIPDGVAEYSVWGLKLPSLRQRLFRCVAVRENDDGTYAITAVQHVPEKESIVDNGASFDPQPGTIHGTVPPAIQHLTTEILAEEGQYQVLARWDTPRVVKGASFSLRLNVAAEDGSDRLVSSAGTPDTQYRFRGLTPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTPGYFQITATPRQAVYDPTVQYEFWFSDAQITDIHQVENAARYLGTALYWIAASVNIRPGRDYYFYIRAVNQVGKSAFVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVELTEDNASKLQQFSKEWQDANDKWNAMWGVKIEQTKDGKYYVAGLGLSMEDMPDGKISQFLVAADRIAYINPANGNETPGFVMQGDQIIMNEAFLKYLSAPTITSGGNPPAFSLTPDGKLTAKNADISGHINAVSGSFTGEINATSGKFSGVIEAREFVGDICGSKVMQGVSIRETNDERSTSTRYTDSATYQIGKTITVMANCERNGGSGAITVTININGQVKTAEVIPYTAGFRPCIRPLSFRSTPLHLSWISAFL
Physico‐chemical
properties
protein length:1092 AA
molecular weight: 120198,30150 Da
isoelectric point:5,31856
aromaticity:0,09066
hydropathy:-0,31117

Domains

Domains [InterPro]
IPR053171
1–837
IPR053171 IPR015406
IPR055385
86–207
IPR055385 IPR032876 IPR055383 IPR013783
IPR003961
617–706
IPR003961 IPR003961
IPR003961
617–700
IPR003961 IPR057587
IPR036116
633–801
IPR036116
IPR013783
646–712
IPR013783
YP_001700593.1
1 1092
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Phage Gifsy-1
[NCBI] 		129861 Viruses >
Host Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
[NCBI] 		99287 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001700593.1 [NCBI]
Genbank nucleotide accession
NC_010392 [NCBI]
CDS location
range 8965 -> 12243
strand -
CDS
ATGGGAAAGGGCGGCGGAAAAGGGCATACGCCCCGCGAGGCACCGGATAACCTTAAATCCACGCAGCTGCTGAGCGTCATCGATGCCATCAGCGAGGGACCGATAGAAGGCCCGGTGAACGGTCTGCAAAGTGTTCTGGTAAACCAGACGCCGGTGGTGGACCGCGACGGTAACACGAATATCCACGGCGTGAAGGTGGTATACCGCGTCGGTGAGCAGGAACAGACCCCGCTGGAGGGATTTGAATCGTCCGGCGCCGAGACGGTGCTTGGTGTACAGGTCAAATACGACAATCCGGTGACCAGAACCATCACGGCTGCAAATATTGACCGCCTGCGTTTTACGTTCGGCGTGCAGTCACTGGTGGAGGCCAACAGCAAGGGCGACCGCAATCCGACATCGGTCAGGCTGCAAATCCATCTTGAGCGCTATGGTCAGTGGGTGGTGGAAAAAGAGATTACGATTACCGGGAAAACAACCACACAGTATCTGGCCTCGGTGATAGTGGATAATCTCCCTCCCCGGCCATTTGGTATCCGGATGGTACGTGTGACGGCAGACAGTACCACTGACCAGTTACAGAACAACACGGTCTGGTCGTCGTATACCGAGATTATTGATGTCCGGCAGCGCTATCCCAACACCGCCGTAATTGGCCTGCAGGTGGAGTCTGAGCAGTTCGGCAGCCAGCAGGTGACGCGAAATTACCATTTTTTCGGGCGGATTATTCATGTGCCGTCGAATTACGATCCGGTAGCGCGAACCTACAGCGGCATCTGGGACGGCACGTTCAAGCCTGCATACAGCAATAATCCGGCGTGGTGTCTCTGGGATGTGCTGACACATCCCCGTTATGGCATGGGACAGCGAATCGGCGCGGCGGACGTGGACAGGTGGGCGCTGTATGCAATAGGCCAGTACTGCGACCAGATGGTCCCTGACGGATTCGGCGGGACAGAGCCGCGTATGACCTTTAATGCGTATCTGGCACAGCAGCGTAAGGCGTGGGATGTGCTGACCGACTTCTGCTCCGCCATGCGTTGTATGCCGGTGTGGAACGGGCAGATGATGACCTTCGTGCAGGACAGGCCCTCGGATACAGTCTGGACCTATACCCGCAGCAATGTGGTAATGCCGGATGAGGGCACACCGTTCCGTTACAGCTTCAGTGCGCGGAAGGACCGCCATAATGCGGTAGAGGTGAACTGGATCGACCCTGATAATGGCTGGCAGACATCCACGGAACTGGTGGAAGACACGGTCGCCATCAGTCACTACGGACGCAATCTGGTAAAAATGGATGCGTTTGGCTGTACCAGTCGCGGGCAGGCGCACCGCGCCGGGCTGTGGCTGATAAAAACGGAGCTGCTGGAAACCCAGACGGTTGATTTTAGTGTGGGTGCGGAGGGGCTGCGCCACGTTCCCGGTGATGTGATTGAGGTTTGCGACGAGGATTATGCCGGCATCAGCCTGGGCGGGCGGATTCTGTCCGTTGACCGCGCCCGCCGCATTCTGACCCTTGACAGGGAGATTACCCTGCCGTCGTCCGGCACCACGCTGATAAGCCTGATGGATGGCGAAGGCTTGCCGGTCAGCGTGGACGTGCAGTCTGTTACCGACGGTGTGCAGGTTCAGGTCAGCCGGATACCGGACGGCGTGGCGGAATACAGCGTCTGGGGGCTGAAACTGCCGTCGCTGCGCCAGCGTCTCTTCCGGTGTGTGGCTGTCCGGGAAAACGACGACGGAACGTATGCCATCACCGCCGTACAGCATGTGCCGGAAAAAGAGTCCATCGTGGACAACGGGGCATCATTCGATCCGCAACCCGGAACGATTCACGGCACCGTTCCCCCGGCGATACAGCATCTGACCACAGAAATTCTGGCGGAGGAGGGACAGTATCAGGTACTGGCGCGCTGGGACACACCGCGAGTCGTTAAGGGCGCCTCGTTTTCTTTGCGCCTGAACGTGGCGGCGGAAGATGGCAGTGACCGGCTGGTAAGCAGCGCAGGAACGCCGGATACGCAGTACCGGTTCCGGGGGCTGACGCCGGGGCGCTACACCCTGTCCGTCAGGGCGGTGAACAGCCAGGGACAACAGGGAGACCCGGCCAGCACACAGTTCAGCATCTCCGCGCCGGCGGCACCATCATTTATCGAACTCACCCCTGGCTATTTCCAGATTACAGCCACACCGCGTCAGGCGGTATACGACCCGACGGTGCAGTATGAGTTCTGGTTTTCAGACGCGCAGATTACGGATATCCATCAGGTGGAAAACGCCGCACGATATCTGGGAACGGCGCTGTACTGGATAGCGGCCAGTGTGAATATCAGGCCCGGCAGGGATTACTATTTTTATATCCGGGCGGTAAATCAGGTCGGTAAATCCGCATTCGTGGAGGCGACCGGGCAGGCCAGCAACGATGCCGCAGGCTATCTGGATTTTTTCAAAGGGCAGATAACTGAAAGTCACCTGGGTAAGGAACTGCTGGAGAAGGTGGAACTGACGGAGGATAACGCCAGCAAACTGCAGCAGTTTTCGAAGGAGTGGCAGGATGCTAACGATAAATGGAACGCCATGTGGGGCGTCAAAATAGAGCAGACCAAAGACGGCAAATATTATGTGGCCGGACTTGGACTGAGCATGGAAGACATGCCTGACGGGAAGATAAGCCAGTTCCTGGTGGCGGCGGATCGCATTGCTTATATTAACCCGGCAAACGGAAACGAGACGCCCGGATTCGTCATGCAGGGCGACCAGATAATCATGAATGAGGCGTTCCTGAAATATCTGAGCGCGCCGACCATTACCAGTGGCGGGAATCCTCCGGCATTTTCCCTGACGCCGGATGGAAAGCTGACTGCGAAAAATGCGGATATCAGCGGGCATATCAACGCTGTATCTGGCTCGTTTACGGGAGAAATCAATGCCACCTCCGGTAAGTTTTCTGGCGTGATAGAAGCAAGAGAGTTTGTCGGTGATATCTGCGGCTCAAAAGTCATGCAGGGCGTGAGCATCAGGGAGACGAACGACGAACGCAGCACCTCAACACGGTATACCGACAGCGCCACCTATCAGATAGGGAAAACCATCACGGTGATGGCTAACTGTGAGCGTAACGGTGGCTCCGGTGCCATCACCGTCACGATAAATATTAACGGCCAGGTGAAAACGGCGGAGGTTATCCCGTATACCGCAGGCTTCCGGCCATGTATCAGACCGTTGTCTTTTCGGTCTACACCACTTCACCTGTCGTGGATATCAGCGTTTCTCTGA

Tertiary structure

PDB ID
981fd9bc893f4f6566f6a8bffbffe7b5e335795dcf7c365b5f7725017d77fe6d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2345
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Refined annotation of the phage genomes integrated into the Salmonella typhimurium LT2 genome Lingohr,E.J., Villegas,A. and Kropinski,A.M. 2011-05-19 — GenBank