Protein

View in Explore
Genbank accession
QIG76874.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVANITSKVASGTTVTISGTATPGKIVRGKIGTTDYSTTADVSGNWTATVNNLPVGVVNVSAREFGSASVLVRKQMEISLARLKNTGNTTQNTLLPTFYTNLALLEGGVVQDRLIIFEYRKSGDTEWLIDGTELTDSSGNATHLFTNTLSDGNWQVRTRAGTLSGGFIEVIGNTISFLVDKPNEAPVMPPSYDKWIDGKAEGKYGYMGYMIIAQGSASGTEFGKILPLNTPKPAATFSIPASSDFAINSSTGMITLINSSLAAGTYYVTVTASNSAGSANITVPLIVTGIVSKVYYVDFDNGLDTNDGRTPAVPLKTLSAANNKRGSDIFSTYTLRFKRGVVWDITSATAPRNLTNYECYGDPSKDPPHFRNMNTGGGIFVYSGASGQINTINMRDLMLTASLTAIDVQNWLTGNIVRIKFGVNAEFGHAMYLHDARGISILHCYVPPGINGDGFYLRKFGRGATPNRVSFCYFGIPYGTGADNLQITSERKSGMQPSNVEVSDNIFRHSVASNATKGNCVIEDGDRVVFERNDCIGNYFCLSQLSRNVTVRDNILRGAILNDNSFGIGSGALDHTIDCRILFNKIEGNWTAIALSGFDDPDTPPGWQRADYEILYNMTRKNKVFAKQDRPASGFIQDNVSEQNNSNSISGNGGAAQAFTVWSTTYTPDYASFTRGSNPVNTTATTDPSTAPSISGTVSVGQTLTVTVPPIGGATSAVQWLLNDQKVVGETGLTYIVPSGAPNNANMPTNLNTPTISCAVIYTMSDGSTLIVPARYDDGKATRMIS
Physico‐chemical
properties
protein length:786 AA
molecular weight: 84110,28330 Da
isoelectric point:6,22429
aromaticity:0,08651
hydropathy:-0,16501

Domains

Domains [InterPro]
IPR013783
2–69
IPR013783 IPR013783 IPR011050
QIG76874.1
1 786
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y1_11
[NCBI] 		2509770 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG76874.1 [NCBI]
Genbank nucleotide accession
MN988558 [NCBI]
CDS location
range 36940 -> 39300
strand +
CDS
ATGGTAGCCAACATCACATCAAAAGTTGCAAGTGGCACCACTGTCACGATCAGCGGCACCGCCACCCCCGGCAAGATCGTCAGGGGGAAAATCGGCACCACCGACTATTCGACCACCGCCGATGTCAGCGGCAACTGGACGGCCACGGTCAACAACCTCCCCGTGGGGGTCGTCAACGTTTCGGCTCGTGAATTCGGCTCGGCGAGCGTCCTCGTCCGAAAACAAATGGAGATTTCCTTGGCTCGCCTGAAAAACACCGGCAACACCACGCAGAACACCCTGCTGCCGACCTTCTACACCAACCTGGCGCTGCTCGAAGGCGGCGTGGTGCAGGACCGCTTGATCATCTTCGAATACCGCAAGTCAGGCGATACGGAGTGGTTGATCGACGGCACGGAACTGACTGACAGCAGCGGCAACGCCACCCACCTCTTTACCAACACGCTCTCGGACGGGAACTGGCAAGTGCGGACGCGGGCAGGCACGCTTTCCGGAGGCTTCATCGAAGTGATCGGTAACACCATCAGCTTCCTGGTTGACAAGCCGAACGAAGCACCGGTTATGCCGCCGTCCTATGATAAATGGATCGACGGCAAGGCCGAGGGCAAATACGGCTACATGGGCTACATGATCATCGCCCAGGGCTCGGCATCCGGCACCGAGTTCGGCAAGATCCTGCCGCTCAACACCCCGAAGCCGGCCGCGACCTTCTCGATCCCGGCCAGCTCCGATTTCGCCATCAACTCCAGCACCGGCATGATCACGCTGATCAACAGCTCGCTGGCCGCCGGCACCTACTATGTGACCGTCACGGCTTCCAATAGTGCCGGCTCTGCGAACATTACCGTCCCTCTGATCGTCACCGGCATCGTCAGCAAGGTCTACTATGTCGACTTCGACAACGGCCTCGACACCAATGACGGACGCACGCCGGCCGTGCCGCTCAAGACGTTGTCGGCGGCCAACAACAAGCGCGGCTCGGACATCTTCTCGACCTACACCCTGCGCTTCAAGCGTGGTGTCGTCTGGGATATTACATCGGCGACGGCCCCTCGCAACCTCACCAACTATGAATGCTACGGTGACCCGTCAAAGGACCCGCCGCATTTCCGCAACATGAACACGGGCGGGGGCATCTTCGTCTACAGCGGCGCGAGCGGGCAGATCAACACGATCAACATGCGCGACCTGATGCTGACCGCTTCGCTGACTGCGATCGACGTGCAGAACTGGCTGACGGGCAACATCGTCCGCATCAAGTTCGGGGTGAACGCCGAATTCGGCCATGCGATGTATCTGCATGATGCACGCGGCATTTCGATCCTGCACTGCTACGTGCCTCCGGGGATCAACGGCGACGGTTTCTATCTGCGCAAATTCGGCCGAGGCGCAACCCCGAACCGCGTGTCGTTCTGCTACTTCGGCATTCCCTACGGCACCGGAGCCGACAACCTGCAGATCACGTCGGAACGCAAGAGCGGCATGCAGCCGTCCAACGTCGAGGTATCCGACAACATCTTCCGCCACTCGGTCGCCTCGAACGCCACCAAGGGCAACTGCGTTATCGAAGACGGCGACCGTGTCGTGTTCGAGCGCAACGACTGCATCGGCAACTACTTCTGCCTGTCGCAGCTCTCGCGCAACGTCACCGTCCGTGACAACATCCTGCGCGGCGCGATCCTCAACGACAACTCGTTCGGTATCGGCTCGGGCGCACTCGACCACACCATCGACTGCCGCATCCTGTTCAACAAGATCGAAGGCAACTGGACAGCCATCGCCCTCTCGGGCTTCGATGACCCTGACACCCCTCCCGGCTGGCAGCGCGCCGACTACGAAATCCTCTACAACATGACGCGCAAGAACAAGGTCTTCGCCAAGCAGGACCGCCCCGCCAGCGGCTTCATCCAGGACAACGTCTCGGAGCAGAACAACAGCAACTCGATCTCGGGCAACGGCGGCGCGGCCCAGGCCTTCACCGTGTGGAGCACGACATACACGCCTGATTACGCCTCCTTCACCCGAGGCTCGAACCCGGTTAACACGACGGCGACCACCGACCCGTCTACGGCCCCCAGCATCTCGGGAACCGTCTCTGTCGGCCAGACGCTGACCGTGACTGTCCCACCGATCGGGGGCGCGACCTCGGCCGTGCAGTGGCTGCTCAATGACCAGAAGGTCGTCGGGGAAACTGGCCTGACCTACATCGTCCCCTCGGGAGCCCCGAACAACGCCAACATGCCGACCAACCTCAACACACCGACCATCTCCTGCGCGGTCATCTACACCATGTCGGATGGCAGCACCCTGATCGTGCCGGCCCGTTATGACGACGGCAAGGCGACCCGCATGATCTCGTAA

Tertiary structure

PDB ID
f2724b1097456c7aee690d709ee919c8ef602c49b23ca48f92e7026829b0a22c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2499
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank