Protein

View in Explore
Genbank accession
CAL9960477.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAITQVGIATLSEELLQYIKDQIKNGTLSFTDLIDGPEYAGQDGKFLQAYSGSGSTGMQWQDLPSAGLNWQVEDTDFLAQDKIGILASNGITITLPSDPEEGNLVAIADHNSEFDVTPVTVVGSGGYLIEDESDLVLDLRNAYVQLIFDGTKWEIAQVNHPFNIQEITEETFPSGQISYTLSRIPPSRSSILVTSGGKIIPTSQYSLVGNVLSFGAVASDIIQVRHIGVPKATEVSDTPVGAMLYFPNSEPVDGWLDCNGSSISASVYPDLVKFLTKNPQAEIAYLPDARGNFIRTFDYGNGTDVIAPHSIDNILKDNKWGRWISTTNEATSENLWDGSTATRTTVLVSQGYIGYRFDAPVTMTDMILNNNDAIGTQHLPDTGIVRASHDGITWVDASNTVTLGATSQGRNTTFTVTTNDAYRFWSIHGTGGQPYADGSGEYWGVTSLYMNGSSTNRIVGGFQEQSVGPMPATTLGGTAAGTLAVASGAGANVLGQGGSGQVSGGGETRPDNQSYVLRIKAFHYQSGDLASTDVTALRDEVSRLSGQVNDGTSYVGPDAPENPSENARWYDTTSGRTYIWFNDGDSYQWVDDSPQAASTAQESLNAAEILSTGSQTAEALNNRFARNATWFDTVADMVSGYGLLAEGYTAITRGYYEAGDGGGAEYLITTGNSGDGYGSHDVGTNTAVLQHNGTVYSKQYGLIEKDSYYDTIDQTDGWISNNLRINAFVRNPEIGHCIFNPSVDTPYITCAGSILIDRGDLHVTIQPQARIYGRRTLPGGVEPSSVGLYSAGGLIVVADYTDPDNGDYTIAGTLSNFTFDGKGQMATIYSTDNDNGGIGIYNHNALSFAQVTNVSLRDFKISECDHVGINFDLDSRDILIENVNVSNTSDENIKVKGDGQVSGAYANVTIRDCALYNSRFGGRNNPMFIWVSNCNATIEGVSMSCTNSSIATKPQGVFVSGCENVTVNSCILNNCSQGVRMYGDSLALTVSNNYMEDCEFIVKRANIVGDSGNSRLTIIDNRCAGDFDALYSTVESVTTLSSLVVKRNDMSSCNSQLDLYLPASFPTATAPNQVDYQNNVPATGFDFNFITAGRVWNSKPGFEYVTVSGTTFTYDYAYYGGGYDKLAIMITGSSRNFPVYYPIWHSWGTNGVQEIYVPTSDDGVTESIQMTVSKSGTILTFTLVNNPLGTNFTLVKAHN
Physico‐chemical
properties
protein length:1199 AA
molecular weight: 128974,50070 Da
isoelectric point:4,40772
aromaticity:0,09675
hydropathy:-0,24020

Domains

Domains [InterPro]
IPR006626
67–89
IPR006626 SSF88874 IPR012334
IPR037053
236–296
IPR037053 IPR011050
IPR011083
241–294
IPR011083 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR011050
917–1125
IPR011050
CAL9960477.1
1 1199
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage D69
[NCBI] 		3105312 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CAL9960477.1 [NCBI]
Genbank nucleotide accession
OZ195729 [NCBI]
CDS location
range 31162 -> 34761
strand +
CDS
ATGGCAATTACGCAAGTAGGTATAGCTACTCTATCGGAAGAGTTGCTGCAATACATCAAAGATCAAATCAAGAACGGCACGCTGTCGTTTACAGACCTTATCGACGGACCTGAGTATGCCGGTCAGGACGGTAAGTTCCTGCAGGCTTATTCAGGCTCAGGATCTACAGGCATGCAATGGCAAGATCTACCATCTGCAGGCCTTAATTGGCAAGTAGAAGATACAGACTTCCTGGCCCAGGATAAGATCGGTATCTTAGCAAGCAATGGAATTACAATAACACTACCTAGTGATCCTGAAGAAGGTAATCTAGTAGCAATAGCGGACCACAACAGTGAGTTCGACGTAACTCCTGTAACGGTAGTAGGTTCCGGAGGCTATCTGATCGAAGATGAATCAGATTTAGTACTAGACCTACGTAATGCTTACGTACAACTAATCTTCGACGGCACTAAGTGGGAGATCGCACAGGTCAACCACCCTTTCAATATCCAGGAGATTACCGAGGAAACTTTCCCAAGCGGTCAGATTTCATATACGCTCAGCCGTATTCCACCAAGCCGTAGCTCTATCCTAGTGACTAGTGGCGGCAAGATCATCCCTACAAGCCAATACAGCTTGGTAGGTAATGTACTTAGTTTCGGAGCAGTAGCATCTGATATTATTCAAGTACGTCATATCGGCGTACCTAAGGCTACTGAGGTTAGCGATACTCCGGTAGGCGCTATGCTTTATTTCCCTAACAGCGAGCCCGTAGATGGGTGGTTGGATTGTAATGGTTCAAGCATTAGTGCCAGTGTATACCCGGACTTAGTCAAGTTCCTTACTAAGAATCCTCAGGCGGAAATCGCATACCTACCTGACGCACGTGGTAACTTTATCCGTACGTTTGATTACGGTAACGGTACTGACGTTATTGCGCCTCACAGTATCGATAATATACTTAAGGATAATAAGTGGGGTCGCTGGATCTCTACGACTAACGAAGCTACGTCAGAGAATCTATGGGACGGCAGCACTGCTACTCGTACCACTGTATTAGTATCTCAAGGTTACATTGGATACCGTTTCGACGCTCCTGTGACTATGACAGATATGATCCTGAATAACAATGATGCTATCGGTACACAACACCTTCCAGATACAGGTATCGTACGTGCCTCTCACGACGGTATTACATGGGTAGACGCATCCAATACTGTTACTCTAGGAGCTACGTCTCAAGGTCGTAATACTACCTTCACAGTTACGACTAATGATGCGTATCGCTTCTGGTCTATTCACGGTACAGGTGGTCAGCCGTATGCTGACGGATCTGGCGAGTACTGGGGTGTAACCAGCCTATACATGAACGGTTCGTCAACTAACCGTATCGTAGGCGGGTTCCAGGAGCAGAGCGTAGGTCCTATGCCTGCAACTACTCTAGGCGGGACTGCGGCAGGTACTCTAGCAGTAGCTAGTGGTGCAGGAGCTAACGTACTAGGTCAAGGCGGAAGCGGTCAGGTATCAGGTGGTGGAGAGACTCGCCCAGATAACCAATCGTACGTCCTACGTATCAAGGCGTTCCATTACCAGTCAGGCGACTTGGCATCTACGGACGTTACTGCACTGCGTGACGAAGTATCTCGTCTAAGCGGGCAGGTTAACGATGGTACATCTTACGTAGGTCCAGACGCTCCAGAGAATCCTAGCGAGAATGCTCGTTGGTATGATACGACTTCTGGTCGTACGTACATCTGGTTCAACGATGGCGATAGCTACCAATGGGTAGATGATAGCCCTCAAGCAGCGTCTACGGCTCAAGAGTCGCTGAACGCAGCAGAGATCTTGTCTACAGGCTCGCAGACCGCAGAGGCGTTAAATAATAGATTCGCACGTAACGCCACGTGGTTTGACACGGTAGCCGATATGGTATCTGGGTATGGCTTACTTGCTGAAGGGTATACTGCGATTACTAGAGGATACTACGAAGCTGGGGACGGAGGTGGAGCAGAGTACTTGATCACCACCGGTAATAGCGGTGACGGATACGGCTCTCATGATGTCGGTACTAATACGGCAGTCTTACAGCATAACGGTACAGTGTATTCTAAGCAATATGGTCTTATAGAGAAAGATTCTTACTATGACACTATTGATCAGACTGATGGCTGGATATCCAATAATTTAAGGATTAATGCATTCGTAAGAAATCCCGAGATAGGGCATTGTATATTCAACCCGTCAGTAGACACCCCCTATATAACATGCGCAGGCTCTATACTAATAGACAGAGGTGATCTTCACGTAACCATACAGCCTCAAGCACGCATATACGGTCGTAGGACACTACCTGGAGGAGTAGAGCCTAGTTCTGTCGGCTTATACTCAGCAGGAGGTTTAATAGTAGTAGCTGACTACACAGACCCCGATAATGGCGACTATACTATTGCAGGAACCTTAAGTAACTTTACATTTGATGGGAAGGGGCAGATGGCAACTATCTACTCTACAGATAATGATAACGGTGGTATAGGCATCTATAACCACAACGCGTTAAGCTTTGCACAAGTAACCAATGTTTCTTTACGAGATTTCAAGATTTCAGAATGCGACCATGTAGGGATTAATTTCGACCTAGATTCAAGAGATATCCTGATCGAGAATGTCAACGTATCTAACACCAGTGATGAGAATATTAAAGTCAAAGGTGATGGTCAGGTATCAGGTGCGTACGCAAATGTAACTATTCGCGATTGTGCGTTATATAACAGCCGATTCGGGGGCCGTAACAACCCTATGTTCATATGGGTATCTAATTGTAACGCTACTATAGAAGGTGTATCTATGTCTTGTACTAATTCGAGTATAGCTACGAAACCTCAGGGAGTATTCGTATCCGGTTGTGAGAACGTCACTGTAAATAGTTGTATACTCAATAATTGCTCTCAAGGCGTCCGTATGTATGGCGACTCTCTAGCGCTCACAGTTAGCAATAACTACATGGAGGATTGTGAGTTTATAGTTAAACGCGCCAATATCGTCGGGGATAGCGGTAACAGTAGGCTGACCATAATCGACAATCGTTGCGCAGGAGATTTCGATGCACTATATAGTACTGTAGAATCTGTTACTACCTTAAGTTCTCTAGTAGTTAAGAGGAATGATATGTCAAGCTGTAACAGTCAATTAGACCTATACCTCCCTGCTAGTTTCCCTACTGCCACGGCACCTAATCAAGTAGATTATCAAAATAACGTTCCTGCCACAGGGTTTGATTTCAACTTCATTACGGCGGGTAGGGTATGGAATTCTAAACCGGGATTCGAATATGTAACCGTATCCGGAACGACTTTCACGTATGATTACGCATATTATGGAGGTGGTTACGATAAATTAGCTATAATGATAACTGGTTCTAGTAGGAATTTCCCCGTGTATTATCCTATATGGCATAGCTGGGGTACCAACGGGGTCCAGGAGATTTACGTACCTACCTCAGATGATGGTGTGACTGAGAGTATACAAATGACAGTATCTAAATCAGGTACTATACTGACATTTACTCTAGTCAACAATCCTCTAGGGACGAACTTCACCTTAGTTAAAGCACACAACTAG

Tertiary structure

PDB ID
2fe12ed45928931093ade5eeebbe7d2e72a771247b9348f182f515bf75725f7d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2398
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50