Protein

View in Explore
Genbank accession
XXQ04805.1 [GenBank]
Protein name
tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALVELITVKGFAESVGSVQELLQQPTSTTEQVLVRGWWPGSNSGGGVFYYDSNRDKSEHDGGTVISPTVPFGSAYADFLNGVGETNPTGKGCWVRVVDGDTYPEWFGAIGNNSFDCAPALQAALDYCSGKRRRSAQAGLMLRLRGGRYVFNTGLTYTWRLDNNIKDDGDMRRLSIEGDAPGSTYLIYNGPQTTPALTIKGGPDGGIYIRAEFKNFRLWRSLNLTRYLGTGISLVGAAVYTFTNVDLGIFNTGLDARDTLYGTFRNCDFSGNNQGVYMSLTSRSSPNSILFDRCMFGGCKVRGAYVINGGSVEFRGCTFEGIGTDGTGQALLYQGGPHEGGMGLTVDSCYFENNFVQFDLDISNGTTYSGTHVIKGNSFNRPNLARAPSSGSINLYSATATMRVLMQSNGFKGFNNYVASSSRPSYTVQSELVRVEDQGNFFMYDGERPRTNGFPVQGLDQSRVAAAARVNADGTLVSGFNVASVTKTGTGAYTVTFTRAIRANAVAVANPFNALAHACATVVGTGSVQVLTHSAANSVADTAFNVVVVGEVT
Physico‐chemical
properties
protein length:553 AA
molecular weight: 59151,25090 Da
isoelectric point:6,54253
aromaticity:0,10669
hydropathy:-0,16022

Domains

Domains [InterPro]
IPR012334
105–451
IPR012334
IPR011050
118–422
IPR011050
IPR039448
231–397
IPR039448
XXQ04805.1
1 553
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage Peggy
[NCBI] 		3442625 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXQ04805.1 [NCBI]
Genbank nucleotide accession
PV796109 [NCBI]
CDS location
range 42008 -> 43669
strand +
CDS
ATGGCGCTTGTTGAGTTGATTACAGTGAAGGGCTTTGCTGAGTCTGTTGGTTCTGTGCAGGAGCTGTTACAGCAGCCCACCAGTACCACGGAACAGGTACTGGTTCGGGGGTGGTGGCCCGGGTCCAATAGTGGTGGCGGTGTATTTTACTATGACAGCAATCGCGATAAGAGTGAGCATGACGGTGGGACTGTGATAAGCCCTACCGTCCCCTTTGGCTCGGCATATGCTGACTTCCTGAATGGGGTTGGGGAAACGAATCCCACAGGTAAGGGGTGCTGGGTACGTGTAGTGGATGGGGATACGTATCCAGAGTGGTTTGGGGCTATCGGTAATAACAGCTTCGACTGTGCCCCCGCCCTACAAGCTGCCCTCGACTACTGCTCCGGCAAAAGACGCAGGTCAGCGCAGGCGGGGCTTATGCTGCGATTACGCGGTGGGCGATACGTGTTCAATACCGGTTTAACATACACCTGGAGGCTTGATAACAATATCAAAGACGACGGGGATATGCGACGTCTTAGTATTGAGGGAGATGCCCCCGGTAGCACGTACCTGATTTATAACGGTCCGCAGACTACCCCTGCGCTCACTATTAAAGGTGGGCCAGATGGAGGTATCTATATCCGGGCAGAGTTCAAGAACTTCCGACTCTGGCGCTCTCTGAACCTCACCCGGTACCTGGGCACGGGTATAAGCCTGGTGGGTGCCGCTGTGTACACGTTCACGAACGTAGACCTGGGTATCTTCAACACAGGATTGGATGCACGAGATACGCTGTATGGTACATTCCGTAACTGCGATTTCAGCGGCAATAACCAGGGTGTGTATATGTCCCTGACTAGCCGCAGCTCGCCTAACTCTATCCTGTTTGACCGGTGCATGTTCGGCGGGTGCAAGGTGCGAGGTGCATACGTTATCAATGGGGGTAGCGTAGAGTTTCGGGGTTGCACCTTCGAGGGCATCGGAACAGACGGCACTGGGCAGGCCCTGCTGTATCAAGGTGGACCGCACGAAGGTGGGATGGGCCTGACCGTGGATAGTTGCTACTTCGAGAATAACTTTGTACAGTTTGATTTAGATATTAGCAACGGTACTACGTATTCAGGTACTCATGTCATTAAGGGTAACAGCTTCAACCGACCTAACTTGGCGCGCGCACCTTCTAGTGGAAGCATAAACCTCTACAGCGCCACTGCGACTATGCGGGTGCTTATGCAGTCCAACGGGTTCAAGGGCTTTAATAACTACGTGGCTAGCTCCTCCAGGCCTTCCTACACGGTGCAGAGCGAGCTTGTACGCGTAGAGGACCAAGGGAACTTCTTCATGTACGATGGGGAGCGCCCACGGACTAACGGGTTCCCGGTACAAGGCTTAGACCAGAGCCGAGTTGCGGCGGCTGCCCGAGTTAACGCAGACGGTACCCTGGTCTCTGGGTTCAACGTGGCAAGTGTAACCAAGACCGGTACTGGTGCTTATACTGTTACGTTTACCCGCGCAATTCGGGCTAATGCTGTTGCAGTAGCTAATCCATTTAATGCGCTGGCGCATGCCTGTGCAACTGTAGTGGGCACTGGCTCGGTGCAGGTGCTAACGCACAGTGCAGCTAACTCGGTGGCAGATACCGCGTTTAACGTGGTTGTGGTTGGGGAAGTAACCTGA

Tertiary structure

PDB ID
39c98cc6df164edb15f4d325373259cf52c1231d87041d550222954a24d36683
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9008
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a new Cronobacter phage Lone,A., Kropinski,A.M. and Anany,H. 2020-07-22 — GenBank