Protein

View in Explore
Genbank accession
QIN96920.1 [GenBank]
Protein name
tail collar domain containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,80
TF
Evidence GenBank
Probability 1,00
Protein sequence
MALNFPSDTSNPYIDPSSGLKYIFNASIGAWEAAIQPPAIVSATQPDITIEGFFWWDSINNVLNVYENGQWVTAGQQGGGSTTVTVGSTPPGAPTGGDLWWDTVSGRLFIYYTDVDSSQWMDASPNLAGSNGGGVVAGNSAPANAVEGDLWYNTLNDTLNIYHNNVWETTQNTVAGVATLSSTTPITLGGTASDPVVGVSNASNSALGVVRLATQSEANTGTSTTAALTPGTLTNAIDNYLPAASDVQAGVVELATSAEIIAGTETDKAMTPAAYAASISSLGIGNPPGTVITFAGSTAPTGYLACSGQQVDRVTYADLFAAVGTVFGVGDGTTTFNLPDLRGEFVRGWDNGRGIDSGRAFGSTQNSANLAHSHTITDPGHQHNATLTDDTRNVADGGVTGGNVPTTAVTDNAVTGITVDSDGGTEARPRNIALLYCIKF
Physico‐chemical
properties
protein length:440 AA
molecular weight: 45130,74640 Da
isoelectric point:4,09783
aromaticity:0,07727
hydropathy:-0,07841

Domains

Domains [InterPro]
IPR037053
278–342
IPR037053
SSF88874
287–439
SSF88874
IPR011083
289–346
IPR011083
QIN96920.1
1 440
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H34
[NCBI] 		2718942 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIN96920.1 [NCBI]
Genbank nucleotide accession
MT162467 [NCBI]
CDS location
range 43759 -> 45081
strand -
CDS
ATGGCACTGAATTTCCCTTCAGATACTTCCAATCCCTACATTGATCCTTCGTCGGGTCTCAAATATATCTTTAACGCCTCGATTGGTGCGTGGGAAGCTGCCATCCAGCCTCCTGCTATTGTATCGGCGACTCAACCCGACATCACCATTGAAGGTTTCTTCTGGTGGGACTCCATCAATAACGTCCTGAACGTTTATGAGAACGGTCAGTGGGTTACTGCGGGACAGCAGGGTGGTGGTTCAACTACCGTTACTGTTGGTAGCACTCCCCCTGGAGCACCTACCGGTGGTGACCTGTGGTGGGATACTGTATCAGGTCGTCTCTTCATTTATTATACCGACGTCGATTCTTCTCAGTGGATGGACGCTTCACCTAACCTCGCCGGTTCTAACGGCGGTGGTGTTGTTGCTGGTAATAGTGCCCCAGCAAACGCCGTAGAAGGTGACCTCTGGTATAACACTCTGAACGACACCCTGAACATCTACCACAACAACGTCTGGGAGACCACTCAGAACACAGTTGCTGGTGTCGCTACGCTTTCTTCTACGACTCCTATCACTCTCGGTGGAACCGCCTCAGACCCCGTTGTGGGCGTCTCTAACGCCTCTAACAGCGCCCTTGGGGTAGTTCGTCTCGCTACTCAGTCAGAAGCTAATACGGGCACCTCCACGACCGCTGCGCTGACCCCCGGCACCCTGACGAACGCTATTGACAACTACCTCCCTGCTGCCTCTGATGTCCAGGCTGGTGTTGTTGAGTTGGCGACCTCTGCTGAAATTATTGCTGGCACCGAGACCGACAAGGCTATGACCCCCGCTGCTTACGCAGCTTCGATTAGCAGCCTGGGTATTGGTAACCCTCCCGGAACCGTTATTACCTTTGCTGGTTCCACTGCCCCTACCGGTTACTTGGCGTGTTCCGGTCAGCAGGTTGATAGGGTAACCTATGCGGACCTGTTCGCTGCTGTCGGCACCGTCTTTGGTGTAGGTGACGGCACGACGACTTTCAACCTCCCCGACCTCCGTGGTGAGTTTGTCCGTGGTTGGGATAACGGTCGTGGTATTGACTCCGGTCGTGCTTTCGGTTCTACCCAGAACTCCGCCAACCTGGCTCACAGTCACACCATCACTGACCCTGGCCACCAACACAACGCAACCCTTACCGACGACACCCGTAACGTCGCTGACGGTGGTGTTACCGGTGGTAACGTCCCCACCACTGCTGTTACCGACAACGCAGTGACCGGTATTACAGTTGATAGCGACGGTGGAACTGAGGCACGTCCTCGTAACATTGCTCTGCTCTACTGCATCAAGTTCTAA

Tertiary structure

PDB ID
d9452111abcf98c73bb7fe30e61d2efff24aaf82827362eefcaada4dd8101362
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8127
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H34 from the Huanghai Sea, China Jiang,T. 2019-04-04 — GenBank