Protein

View in Explore
Genbank accession
YP_001700581.1 [GenBank]
Protein name
putative bacteriophage host-specificity protein; Lambda gpJ homolog
RBP type
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MGKGGGSSKTPHEAPDDLKSSQMLTVVDAICEGPIEGPVDGLKSVRINKTPVLDSDGNAMVHGVTVVYRVGEDEQSAMEGFEDSGAETLLGVEVKKSEPVTRTITTKTVDRLRFTFGVQSLVSTSTKGDRNPTSVQMLIQFRRDGQWQVERDITITGKTTTQFLASVVIDDLPPRPFEVRMMRITDDSTSDLLQNKTVWSGYTEIIDVKQCYPNTAVIGVKVDAEQFGSQQVTRNYLLRGRIVPVPSNYDPVKRTYTGIWDGTFKPAWTDNPAWCVLDMLTHPRYGMGNRIGVADVDKWALYAIAQYCDQPVPDGFGGTEPRITCNAYLTDQRKAWDVLGDFCSLMRCMPVWNGSTLTFVQDRPSDKVWTYTQSNVVMPADGAPFVYSFSALKERHNAAEVRYTDPNNGWETSTELVENDAAIRRYGRNVLKMDAFACTSRGQAHRAGLWAITTELLETQTVDFSVGAEGLRHVPGDIIEVCDSDYAGVTVGGRVLSVDSLSRTLTLDREVDIPAGGNVVLNLVGSNGQPVTVAVTAHPAPDRVTVSQLPDGVAAYSVWGLKLPDLRQRLFRCVAIRENDDGTYAITAVQHVPEKESIVDNGAKFDPLPGTSITNTPPAVQHLTTEILAEEGQYQARARWDTPRVVKGVNFSLRLTVKAEDDSDRLASSLTLTETEHTFRNLTPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTPGYFQITATPRQAVYDPTVQYEFWFSDAQITDIHQVENAARYLGTALYWIAASVNIRPGRDYYFYIRAVNRVGKSAFVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVDLTEDNASKLQQFSKEWQDANGKWNAMWGVKIEQTEDGRHYVAGLGLSMEDTPDGKISQFLVAADRIAFINPQNGNQTPGFVMQGDQIFMNEAFLKYLSAPTITSGGNPPAFSLTPDGRLTAKNADISGHINAISGALNNVVIAEDCTIQGTLRAERILGDIVKAVGKEFPYFREPATGAKRYASGTLTVQIDDDQSFDRQIIIPPINFQGSYYGRNDTWDTCTLEVRRNGALIYSGTSSSVPESYGATLDMPAGGGIVTLTFSVSTRGNSTGWPNSRISDLILMVVKKSTAGIRIS
Physico‐chemical
properties
protein length:1131 AA
molecular weight: 123954,63690 Da
isoelectric point:5,14941
aromaticity:0,08488
hydropathy:-0,30106

Domains

Domains [InterPro]
IPR053171
1–839
IPR053171 IPR015406 IPR021034
IPR055385
86–207
IPR055385 IPR032876 IPR055383 IPR013783
IPR036116
614–719
IPR036116
IPR003961
617–700
IPR003961 IPR003961
IPR003961
617–706
IPR003961 IPR057587
IPR013783
646–713
IPR013783
YP_001700581.1
1 1131
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Fels-1
[NCBI] 		128975 Viruses >
Host Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
[NCBI] 		99287 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001700581.1 [NCBI]
Genbank nucleotide accession
NC_010391 [NCBI]
CDS location
range 33052 -> 36447
strand +
CDS
ATGGGTAAGGGTGGTGGCAGCAGTAAGACGCCGCATGAGGCTCCTGACGACCTGAAATCCAGTCAGATGCTGACCGTTGTTGATGCCATTTGCGAGGGGCCGATCGAAGGCCCGGTGGACGGGCTGAAAAGTGTCAGAATAAACAAAACCCCGGTCCTCGACAGTGACGGTAACGCGATGGTTCACGGTGTCACCGTGGTTTACCGCGTGGGCGAGGATGAGCAGTCTGCGATGGAGGGGTTTGAAGATTCCGGCGCTGAAACCCTGCTGGGTGTGGAGGTCAAAAAGTCAGAGCCGGTGACCCGCACCATTACCACCAAAACGGTGGACCGCCTGCGCTTTACCTTTGGTGTGCAGTCGCTGGTCAGTACCAGTACCAAAGGCGACCGCAACCCGACCAGTGTACAGATGCTGATCCAGTTTCGCCGTGATGGCCAGTGGCAGGTGGAACGGGATATTACCATTACGGGTAAAACGACCACGCAGTTTCTGGCGTCCGTGGTGATCGATGATTTGCCGCCCCGGCCGTTTGAAGTCCGCATGATGCGCATCACTGATGACAGTACGTCAGACCTGCTGCAGAACAAAACGGTGTGGTCGGGCTATACCGAAATCATTGATGTGAAACAGTGCTACCCGAACACCGCTGTTATCGGGGTAAAAGTGGATGCGGAACAGTTTGGCAGCCAGCAGGTCACGCGAAACTACCTTCTGCGCGGGCGTATTGTGCCGGTCCCGTCGAATTACGATCCGGTAAAACGGACATATACGGGAATATGGGACGGGACGTTTAAACCTGCCTGGACAGATAATCCGGCCTGGTGTGTGCTGGATATGCTGACTCACCCGCGCTATGGCATGGGAAACCGCATTGGTGTTGCCGATGTGGACAAGTGGGCGCTGTATGCCATTGCGCAATACTGTGATCAGCCCGTTCCGGACGGCTTCGGCGGGACAGAGCCGCGCATCACCTGCAATGCGTATCTGACGGACCAGCGTAAAGCGTGGGACGTGCTGGGGGATTTCTGTTCCCTGATGCGCTGCATGCCAGTGTGGAACGGCAGTACCCTGACGTTTGTGCAGGACCGGCCCAGCGATAAAGTCTGGACCTACACGCAGAGCAATGTGGTGATGCCCGCTGATGGAGCGCCATTCGTCTACAGCTTCAGCGCGCTGAAAGAGCGCCATAATGCCGCCGAGGTCCGCTACACCGACCCGAACAACGGCTGGGAAACCTCCACCGAACTGGTGGAAAATGACGCTGCCATCCGGCGCTACGGGCGCAACGTCCTTAAAATGGATGCGTTCGCCTGTACCAGTCGTGGGCAGGCGCACCGCGCAGGACTGTGGGCCATCACCACCGAATTACTGGAAACGCAGACGGTGGATTTTTCCGTGGGGGCAGAAGGGCTGCGTCACGTTCCCGGCGATATCATCGAGGTCTGTGACAGTGATTATGCCGGCGTGACCGTTGGCGGACGCGTCCTGTCAGTCGACAGCCTTTCCCGTACGCTTACGCTGGATCGTGAGGTGGATATACCGGCAGGCGGCAATGTGGTGCTGAACCTGGTGGGCAGTAATGGCCAGCCTGTTACCGTCGCGGTCACCGCGCACCCCGCCCCGGACCGCGTTACCGTCAGCCAGTTACCCGATGGCGTGGCGGCGTACAGCGTGTGGGGGCTGAAATTACCGGACCTGCGCCAGCGCCTGTTTCGCTGCGTGGCTATACGGGAAAACGATGACGGAACGTATGCCATCACCGCTGTGCAGCATGTCCCGGAGAAAGAGAGCATCGTGGACAACGGAGCGAAGTTTGACCCGTTGCCCGGAACCAGCATCACGAATACACCGCCCGCCGTGCAGCATCTCACTACGGAGATTCTGGCAGAAGAGGGACAGTATCAGGCGCGGGCGCGCTGGGATACCCCGCGCGTGGTGAAGGGGGTTAACTTCTCCCTGCGCCTGACAGTGAAAGCGGAAGATGACAGCGACCGCCTGGCCAGCAGCCTGACCCTGACCGAAACGGAGCATACCTTCCGCAACCTGACGCCGGGGCGCTACACCCTGTCCGTCAGGGCGGTGAACAGCCAGGGACAACAGGGAGACCCGGCCAGCACACAGTTCAGCATCTCCGCGCCGGCGGCACCATCATTTATCGAACTCACCCCTGGCTATTTCCAGATTACAGCCACACCGCGTCAGGCGGTATACGACCCGACGGTGCAGTATGAGTTCTGGTTTTCAGACGCGCAGATTACGGATATCCATCAGGTGGAAAACGCCGCACGATATCTGGGAACAGCGCTGTACTGGATAGCGGCCAGCGTGAATATCAGGCCCGGCAGGGATTACTATTTTTATATCCGGGCGGTAAATCGGGTCGGTAAATCCGCATTCGTGGAGGCGACCGGGCAGGCCAGCAACGATGCCGCAGGCTATCTGGATTTTTTCAAAGGGCAGATAACTGAAAGTCACCTGGGTAAGGAGCTGCTGGAAAAAGTAGATCTGACGGAGGATAACGCCAGCAAACTGCAGCAGTTTTCGAAGGAGTGGCAGGACGCGAACGGTAAGTGGAATGCCATGTGGGGCGTCAAAATAGAGCAAACCGAGGACGGCAGGCATTATGTGGCTGGTCTGGGCCTGAGCATGGAGGATACGCCGGACGGGAAGATAAGCCAGTTTCTGGTAGCAGCGGACCGCATTGCATTCATTAACCCGCAAAACGGAAACCAGACGCCCGGATTCGTCATGCAGGGTGATCAGATATTCATGAACGAGGCATTCCTGAAATACCTGAGCGCGCCGACCATCACCAGTGGCGGGAATCCTCCTGCGTTTTCCCTGACGCCGGACGGTCGTCTTACTGCGAAAAATGCGGACATCAGTGGGCATATTAATGCTATTTCGGGGGCGCTGAATAACGTCGTTATTGCTGAGGACTGCACGATTCAGGGGACGTTGCGGGCCGAACGTATCCTCGGCGATATAGTCAAAGCGGTGGGTAAAGAGTTCCCGTATTTCAGGGAGCCAGCCACCGGAGCAAAGCGTTACGCCAGTGGCACACTGACCGTTCAGATAGATGACGACCAGTCATTTGACCGCCAGATTATTATCCCCCCCATCAATTTTCAGGGGAGTTATTACGGACGCAATGATACGTGGGATACGTGTACGCTGGAAGTGCGCCGCAATGGCGCGCTGATTTACAGCGGAACGAGCAGCAGCGTTCCTGAGTCATACGGCGCCACGCTGGATATGCCCGCCGGAGGCGGCATTGTCACACTGACATTTAGTGTCAGTACCAGGGGGAACAGCACAGGATGGCCGAATTCCAGAATAAGCGATCTGATTCTGATGGTTGTTAAAAAATCCACTGCAGGGATTCGTATCAGTTAA

Tertiary structure

PDB ID
9c8a02814760d1e08d8c38e5aec585456c99f53646fabef3ad6388ca69687ccd
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2393
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. 6858 11677609 GenBank
Refined annotation of the phage genomes integrated into the Salmonella typhimurium LT2 genome Lingohr,E.J., Villegas,A. and Kropinski,A.M. 2011-05-19 — GenBank