Protein

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Genbank accession
YP_009619180.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MAIVGVPGWIGESAVNETGQRWMDAAMRAVRVSVPGWMSSMAGQSKEVYYSIGASNSYNKDTLINWIKAQGSTPVVITITGNIVSSSAGQPCLDFPSSLTNSYVTLNINSGVHVWGRGGNGGNNSAGGAGGTAINNAIGTRLRINNNGVIAGGGGGGGGGYYSPFSQMKLTFGGGGGRPFGAAGGSANMEQGATAGTISAPGKGSVNGIYNGGNGGDAGAAGGKCNIRGQGSEYNGGAAGKAVTGNAPTWTKVGTIYGSRV
Physico‐chemical
properties
protein length:261 AA
molecular weight: 25766,22650 Da
isoelectric point:9,65867
aromaticity:0,07280
hydropathy:-0,16820

Domains

Domains [InterPro]
IPR048291
1–42
IPR048291 IPR007932
YP_009619180.1
1 261
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf24
[NCBI] 		2024309 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009619180.1 [NCBI]
Genbank nucleotide accession
NC_042078 [NCBI]
CDS location
range 83312 -> 84097
strand +
CDS
ATGGCAATTGTAGGTGTTCCTGGCTGGATTGGTGAATCTGCCGTGAATGAAACAGGACAGCGTTGGATGGATGCTGCAATGAGAGCAGTCCGTGTTTCAGTTCCCGGTTGGATGAGCTCAATGGCCGGACAATCTAAAGAAGTATATTATAGCATTGGTGCTAGTAATTCTTATAATAAAGATACATTAATAAACTGGATAAAAGCACAAGGGTCCACGCCTGTTGTTATTACTATTACAGGAAATATCGTTTCTTCATCAGCGGGTCAACCATGTTTAGATTTTCCTAGTTCATTAACTAACTCATATGTAACGCTTAATATTAATTCGGGTGTACATGTCTGGGGTCGTGGTGGTAATGGCGGAAATAATTCTGCAGGTGGCGCAGGTGGTACTGCTATAAACAATGCAATAGGAACCAGATTACGTATTAACAACAATGGGGTTATTGCAGGTGGAGGCGGCGGCGGCGGTGGCGGATACTATTCTCCTTTTTCACAAATGAAATTAACCTTTGGGGGTGGTGGCGGTCGTCCATTTGGTGCTGCTGGCGGGTCTGCTAATATGGAACAGGGCGCTACTGCTGGTACTATTTCTGCACCTGGTAAAGGGTCTGTCAATGGTATCTATAATGGCGGGAATGGCGGTGATGCTGGTGCCGCAGGTGGTAAATGTAATATTCGTGGGCAAGGATCAGAATATAACGGCGGTGCGGCCGGTAAAGCTGTTACTGGTAATGCTCCAACTTGGACTAAGGTTGGTACAATATATGGTTCAAGAGTATAA

Tertiary structure

PDB ID
e9ac09798a774e3bc3d304199da36dc46524f3de1e5b89380a3923f9f801cbfc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8861
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank