Protein

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Genbank accession
YP_007674395.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,55
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAIRKPSEYFDREKASVENVIQGSIENPELNTISDAYDAFKRNLSKVDVLTDFSETLGNYQSNIEKVNHLSEKIDEIDGDIKNLLTKEDLDKALVSQLLFLEECIRDVQEKVKGINQKNLTQVKLDVSSLSETVNTFIDDELPRYEKLVSDSEIRLTNRCEVLEEELKETLDNIKDVVDEKYVQDFNSLNEELGRIKKNDIPKYKNLIVDSEIKTDSKIKEFAEFLDNTVNDVVSKIELVKEDNTEIFDTLNSKVSEVNQIHDLMLEDIEKSETTRDELDKKVVDLKIEILRNESHIENQNKSIETIHEDVKSAIDKLSIEEIQKNNSRLASKVKYIEEVFEKFNEKEILNESIITEPSSSDNSDPLTPLDQKFVTLDQLQSHYRLFVNRIQQQLSSLGGGGETKLKYLDDIVGIATNASAYNGKFLKYDHSIEKFEFVTVSGGGGGSQTLDETLQLGDTSTRGMSVGVVTSTKLHVDPVGSGVTYSEDLVVVGNGRVTGILSIGTSSIVLDSNNNSITGTGNLNISGVSTFSGDVTITSTGNLILDSNGTQKVIFKDSSIDGLELAYYTNGDYLSIQKSSNTHSLLRAYRDGGQIELYYSNAKKLETTGIGISVFNGASDTATIAGPSNLIIDPGVVGDNTGIVRIKGDLYVDGTETFVNSTTVEIADKVIGIATTCTSNLLTDGAGIGIGSDKTFLYEFNSGTNPSLKSSENLNVLTGKGYQVNQVEVLNATTLGSSVVNSSLTSVGTLSALTVGGDLSIADKIIHDGDTDTAIRFPAADTVAVETAGAERLRITSAGNVGIGTDNPQGILHVSSGTSGDATLILEADTDNNDETDNPNIVFRQDGALDLGSIGMNLTNSSSIGPSNALYLATSSGDAAIVFATGTTNGYTNATERLRITSTGNVGINSTSPSEKLDVIGTVKATTFSGNLPTTDLTGTITNAQLAGSIANSKLANDSVSYGGVSLDLGASDATPAFDLSDATNYPTSSLSGTISAAQLANTSVSAGSYTNSDITVDAQGRITAASNGSGGGGATAIKCAIYKDATGGENFNATTATRISNIDDAASFNDAIFSESGGVYTINETGVYEVNIEFCLNGTTGSNYRYTGELDMRLNSDTGTLLARVHDGYIRRTSNANQTAFNLNTIESFTTGDNFRFTLRRTNINTGTAITIADTCRVMIKQLST
Physico‐chemical
properties
protein length:1187 AA
molecular weight: 127275,04100 Da
isoelectric point:4,50764
aromaticity:0,05644
hydropathy:-0,28863

Domains

Domains [InterPro]
DC_2217
STR
1–277
DC_2217 DC_1386
Coil
Unmapped
67–87
Coil Coil Coil
DC_2218
STR
275–650
DC_2218
YP_007674395.1
1 1187
Architecture
STR
STR 1-937 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007674395.1
1 1187
Domain Start End Length (AA) Confidence
N-terminal 1 470 470 0,9759
Central domain 471 687 218 0,2985
C-terminal 688 1187 499 0,8197
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-470
Central
471-687
C-terminal
688-1187

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SKS1
[NCBI] 		754042 Uroviricota > Caudoviricetes > Llyrvirus >
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674395.1 [NCBI]
Genbank nucleotide accession
NC_020851 [NCBI]
CDS location
range 28078 -> 31641
strand -
CDS
GTGGCAATCAGAAAACCATCAGAATACTTTGATAGAGAAAAAGCATCTGTTGAAAATGTAATTCAGGGGAGTATTGAAAATCCTGAACTGAATACTATTTCTGATGCCTATGATGCATTCAAAAGAAATTTAAGTAAGGTTGATGTTCTAACTGATTTTTCTGAAACATTAGGGAACTATCAATCTAATATAGAAAAGGTAAATCATCTCTCAGAAAAAATTGATGAGATAGACGGTGATATTAAAAATCTTCTTACGAAAGAAGATTTGGACAAGGCATTAGTATCTCAACTTTTGTTTCTTGAGGAATGTATTCGTGATGTTCAAGAAAAAGTTAAAGGTATAAATCAAAAAAATCTGACTCAAGTTAAACTAGATGTTTCTAGTTTGTCTGAAACCGTCAATACTTTTATTGATGATGAACTTCCAAGATATGAAAAATTAGTTTCTGATTCTGAAATTAGACTTACTAATAGATGTGAAGTATTAGAAGAAGAACTGAAAGAAACTTTAGATAATATAAAAGATGTTGTTGATGAAAAATATGTTCAGGATTTTAATTCTCTCAATGAAGAACTTGGTAGAATAAAGAAGAATGATATACCAAAATACAAAAATTTAATTGTTGACTCTGAAATAAAAACAGATTCAAAAATTAAAGAGTTTGCGGAATTTTTAGATAATACTGTAAATGATGTTGTATCTAAAATTGAACTTGTAAAAGAAGATAATACTGAAATTTTTGATACTTTAAATTCTAAAGTTAGTGAAGTTAATCAGATTCATGATCTGATGCTTGAGGATATTGAAAAGAGTGAAACTACTAGAGATGAACTAGATAAAAAAGTTGTAGATTTAAAAATTGAGATTCTTAGAAATGAATCACATATTGAAAATCAAAATAAAAGTATTGAAACTATTCATGAAGATGTTAAATCTGCGATTGATAAGTTAAGTATTGAGGAAATACAAAAGAATAACTCAAGACTTGCAAGTAAAGTAAAATATATTGAAGAAGTATTTGAGAAATTTAACGAGAAAGAAATTCTTAATGAAAGTATTATTACAGAACCTAGTTCTTCAGATAATAGTGATCCATTAACACCATTAGATCAAAAATTTGTAACTTTGGATCAACTCCAGAGTCACTATAGGCTATTTGTAAATCGTATTCAACAACAACTTTCATCACTTGGTGGTGGTGGTGAAACTAAATTAAAGTATCTTGATGATATTGTTGGTATTGCTACGAATGCTTCTGCTTATAATGGTAAATTTTTAAAGTATGATCATAGTATTGAGAAATTTGAATTTGTAACTGTTAGTGGTGGAGGTGGTGGTTCTCAAACACTCGATGAAACTTTACAACTAGGAGATACTTCTACCAGAGGAATGAGTGTTGGTGTTGTTACTTCTACCAAACTTCATGTAGATCCTGTTGGTTCAGGTGTTACTTATAGTGAAGATTTAGTTGTTGTTGGTAACGGAAGAGTTACTGGAATTTTAAGCATAGGTACATCTTCAATTGTATTAGATTCTAATAATAACAGCATAACTGGAACTGGCAATTTAAATATTTCTGGTGTCTCTACATTCTCTGGTGATGTGACAATAACAAGTACTGGAAATTTAATATTAGACAGTAATGGTACTCAAAAAGTAATATTCAAAGATAGTAGTATTGATGGACTAGAATTAGCATATTACACAAATGGTGATTATCTATCCATCCAAAAATCATCTAATACTCATAGTCTTTTACGTGCTTATAGGGATGGAGGTCAAATAGAACTTTACTATAGCAACGCCAAAAAACTTGAAACGACTGGTATTGGTATATCTGTTTTTAATGGTGCTAGTGATACCGCAACGATTGCTGGACCATCTAATTTAATTATTGATCCAGGTGTTGTTGGTGATAATACTGGTATTGTTAGAATTAAAGGTGATTTATATGTCGATGGTACTGAAACTTTTGTAAATTCTACGACAGTTGAGATTGCAGATAAAGTTATTGGTATTGCTACTACTTGTACTTCCAATCTTCTGACTGATGGTGCTGGTATTGGAATTGGTAGTGATAAAACATTCTTATATGAGTTTAATAGTGGAACTAATCCCTCACTTAAATCTAGTGAAAACTTAAATGTTCTCACAGGAAAAGGATATCAGGTTAATCAAGTTGAAGTATTGAATGCAACAACATTAGGATCTAGTGTTGTTAATTCTTCTCTGACTTCCGTTGGAACACTTAGTGCTCTTACTGTAGGTGGTGATCTATCCATAGCAGATAAGATAATTCATGATGGTGATACTGATACTGCGATTAGATTCCCTGCTGCTGATACAGTTGCGGTAGAGACTGCTGGAGCAGAAAGACTTCGTATAACTTCTGCTGGCAATGTTGGTATCGGAACTGATAATCCACAAGGGATATTGCACGTTTCATCAGGAACTTCTGGAGATGCAACGTTAATTCTTGAAGCAGACACTGACAATAATGATGAAACTGATAATCCAAACATAGTGTTTAGGCAAGATGGTGCATTGGATTTAGGTTCAATCGGGATGAACCTTACTAATTCAAGTTCAATTGGTCCCAGTAATGCATTATATCTCGCTACATCAAGCGGAGATGCTGCAATTGTTTTTGCTACAGGAACTACAAACGGTTACACAAATGCAACAGAAAGACTTCGTATAACTTCTACTGGTAATGTTGGCATCAATAGCACTTCTCCATCAGAAAAACTTGATGTAATTGGAACTGTTAAGGCAACAACATTCAGTGGAAATCTACCAACAACAGATTTAACAGGAACCATTACGAATGCTCAACTTGCCGGGTCTATTGCCAACTCTAAGTTAGCAAACGACAGTGTTTCCTATGGTGGAGTATCACTAGATCTTGGTGCTTCTGATGCTACTCCAGCATTTGATTTAAGTGATGCCACTAACTATCCTACTTCATCTCTATCAGGTACAATTTCAGCTGCTCAACTTGCTAATACATCTGTCTCTGCAGGTTCTTATACTAACTCAGATATTACTGTTGATGCTCAGGGTCGTATTACTGCTGCCTCTAATGGATCTGGTGGTGGAGGTGCAACAGCAATAAAATGTGCGATTTATAAAGACGCTACTGGTGGTGAAAACTTTAACGCCACAACTGCCACCAGAATCTCAAATATTGATGATGCAGCATCTTTTAATGATGCAATTTTTTCGGAAAGTGGTGGTGTTTACACGATAAATGAAACGGGAGTGTATGAAGTTAATATTGAGTTTTGCCTTAACGGTACTACAGGAAGTAACTATAGATACACAGGAGAATTAGATATGCGTCTGAACTCAGATACTGGAACATTATTGGCTAGAGTTCATGATGGATATATTCGTCGTACCTCTAATGCAAATCAAACTGCATTTAACCTTAATACAATTGAAAGTTTTACTACTGGTGATAATTTTAGATTTACGTTGAGACGAACTAATATCAATACTGGAACCGCAATTACTATAGCTGATACTTGTAGAGTAATGATTAAACAGTTATCTACTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f518c89fa8a311c46459b847588346875389b83dbfe398960853ff009c52c308
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5212
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-SKS1 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank