Protein

View in Explore
Genbank accession
YP_009198669.1 [GenBank]
Protein name
RBP2
RBP type
TSP
Evidence DepoCatalog
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MPRFNQPKGSTIGVLRDGRTIQEAFDSMPRLESFEGSTPTDKLRAAITLGVSEVAIGPVEGNDGSPYEFGEVVIPYPLRIVGCGSQGINVTKGTVLKRSAGASFMFHFSGEGQSQRPMGGGLFNINLNGDSATALGDIIKVTQWSCFKAQNCSFQNMAGWGIRLKDVMESTITGNLFRRLGGPSGGGILFDDIRSAVTDNVNNLHIEDNTFALISGPWIGSTANSNPDLIWICRNKFEYDGTPAVPNENPSYVLDFAQLSRAFISENGFTHFTTARNNYAGVLRIGSTALGTVLFEDNLLFACESAGVINGGIVESRGNINNQGSASAAITQFTNNSSKVCKLQRVVNIQSNGNVSVGPQLFPAGYINMAELPGNTRLSSEYDADGETTSVLRVPANTQVRQWAVPKMYQDGLTVAKVTVRANGASSGAIISLQSGSTVLSTKPIDAGVWKNYVFYVKANQLPETLQLRNTGTVDALVDGMVFEKVNYIDWDFAVTPGTLAVGAKYTSPNQSYLDVAGMRVQAVSTPMFDGPTTGLQVWVEATSGNGSFTVVMKNDTAAELVTTVTRCRVRAFVS
Physico‐chemical
properties
protein length:575 AA
molecular weight: 61547,60450 Da
isoelectric point:5,65113
aromaticity:0,08522
hydropathy:-0,09270

Domains

Domains [InterPro]
IPR011050
39–341
IPR011050
IPR012334
63–441
IPR012334
YP_009198669.1
1 575
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage K5
[NCBI] 		1647374 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Klebsiella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009198669.1 [NCBI]
Genbank nucleotide accession
YP_009198669.1 [NCBI]
CDS location
range 35826 -> 37553
strand +
CDS
ATGCCACGTTTCAATCAGCCGAAAGGTTCAACCATTGGTGTGCTCAGGGATGGGCGCACTATCCAAGAGGCATTCGACTCTATGCCCCGCCTTGAGTCATTTGAAGGGAGCACACCCACTGACAAACTCCGGGCGGCAATTACCCTAGGTGTATCTGAGGTAGCCATTGGTCCAGTAGAAGGAAATGATGGTAGTCCTTATGAGTTCGGTGAGGTGGTGATTCCGTACCCTCTGCGTATCGTAGGGTGCGGCTCTCAGGGAATCAACGTTACTAAGGGCACCGTGCTCAAACGCTCCGCTGGTGCATCCTTTATGTTTCACTTCAGTGGCGAAGGTCAGTCACAGCGTCCTATGGGCGGAGGCTTGTTCAATATCAACTTGAACGGCGACTCAGCGACGGCACTCGGTGACATCATTAAGGTTACCCAGTGGTCATGCTTTAAGGCTCAGAACTGTTCCTTCCAGAATATGGCTGGCTGGGGCATCCGCCTGAAAGACGTAATGGAGTCAACAATAACTGGCAACTTGTTCCGACGCTTGGGCGGACCGTCTGGTGGTGGTATACTGTTCGACGATATCCGGTCGGCGGTGACAGACAACGTTAACAACCTCCACATTGAAGACAATACGTTCGCGCTTATCTCTGGACCATGGATTGGATCAACAGCCAACTCGAACCCCGACCTTATCTGGATTTGTCGCAACAAGTTCGAGTATGATGGTACGCCAGCTGTCCCTAACGAAAACCCATCTTACGTGCTGGACTTTGCGCAGCTGAGCAGGGCGTTTATCTCTGAGAACGGGTTCACCCACTTCACTACAGCACGTAACAATTATGCTGGCGTGTTGAGGATCGGTTCGACAGCGTTAGGCACTGTGCTGTTCGAAGATAACCTCCTGTTCGCTTGTGAGTCGGCTGGTGTGATTAATGGTGGTATCGTCGAGAGCCGTGGTAACATCAACAACCAAGGGTCTGCCAGCGCGGCTATCACCCAGTTCACCAATAACTCCAGCAAGGTCTGTAAGCTACAGCGTGTGGTTAACATCCAGTCTAACGGTAACGTCTCTGTGGGACCCCAGCTGTTCCCTGCTGGTTACATCAACATGGCAGAACTTCCGGGTAACACTCGGTTATCTTCCGAGTACGACGCTGATGGTGAAACAACATCGGTACTCCGTGTTCCAGCAAACACTCAGGTTCGACAATGGGCTGTCCCCAAGATGTATCAGGATGGACTGACGGTTGCCAAGGTCACTGTACGGGCAAATGGTGCATCGTCTGGTGCTATCATCTCGTTGCAGAGCGGCTCAACCGTATTATCCACCAAGCCTATTGATGCTGGGGTGTGGAAGAACTACGTGTTCTACGTGAAAGCTAACCAACTGCCAGAAACGTTGCAGCTTCGTAATACAGGTACTGTTGATGCCCTCGTGGACGGTATGGTGTTCGAAAAGGTTAACTATATTGACTGGGACTTCGCGGTGACTCCGGGTACGCTGGCCGTCGGCGCTAAGTACACATCCCCCAACCAATCGTATCTAGACGTTGCCGGGATGCGCGTTCAAGCTGTTAGCACACCAATGTTTGACGGCCCAACAACTGGGTTACAGGTCTGGGTTGAGGCAACCAGCGGCAACGGTTCGTTTACCGTGGTCATGAAGAACGACACAGCGGCTGAGCTGGTGACCACAGTAACACGATGCCGAGTAAGAGCATTCGTCTCATAA

DepoCatalog

K-type Target
K21
Number of Rings

11

Structural Classification
Domain Ranges
N-terminal Domain
1-39
Central Domain
40-357
C-terminal Domain
358-725
Catalytic Information
Mechanism of Action: Hydrolase
Cleaved Bond: β-D-Gal-(1→3)-α-D-GlcA
Experimentally Tested K-types
K1
K2
K12
K13
K14
K15
16
K17
K20
K21
K23
K24
K25
K39
K55
K62
K64
KL107
KL108
KL112
KL114
KL161
Phage Morphotype

Podo-type

Tertiary structure

1 / 2
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
Depolymerisation of the Klebsiella pneumoniae Capsular Polysaccharide K21 by Klebsiella Phage K5 Lukianova, Anna A.; Shneider, Mikhail M.; Evseev, Peter V.; Egorov, Mikhail V.; Kasimova, Anastasiya A.; Shpirt, Anna M.; Shashkov, Alexander S.; Knirel, Yuriy A.; Kostryukova, Elena S.; Miroshnikov, Konstantin A. 2023-01-01 — 10.3390/ijms242417288